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Protein Overview: rnh-1.0

General Information:
Name(s) found: rnh-1.0 / CE33660 [WormBase]
Description(s) found:
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  • WBGene00004382 locus:rnh-1.0 status:Confirmed UniProt:Q86MG7 protein_id:CCD70468.1 [WormBase]
  • gi|71991049|ref|NP_001022217.1| F59A6.9 [Caenorhabditis elegans] [NCBI NR]
  • gi|29570460|gb|AAO91712.1| Rnase h protein 1.0, isoform c, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|115532542|ref|NP_001040786.1| RNase H family member (rnh-1.0) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep104.fasta]
  • Hypothetical protein F59A6.9 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE33660 WBGene00019088 status:Partially_confirmed TR:Q86MG7 protein_id:AAO91712.1 [wormpep150.fasta]
  • 33660 WBGene00019088 status:Partially_confirmed TR:Q86MG7 protein_id:AAO91712.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • status:Partially_confirmed TR:Q86MG7 protein_id:AAO91712.1 [wormpep115.fasta.reversed]
  • CE33660 WBGene00004382 locus:rnh-1.0 status:Partially_confirmed UniProt:Q86MG7_CAEEL protein_id:AAO91712.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE33660 WBGene00004382 locus:rnh-1.0 status:Partially_confirmed UniProt:Q86MG7_CAEEL protein_id:AAO91712.1| [wormORF-contam.fasta]
  • CE33660 WBGene00004382 locus:rnh-1.0 status:Partially_confirmed TR:Q86MG7 protein_id:AAO91712.1 [wormpep160-contam.fasta]
  • Rnase h protein 1.0, isoform c [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • RNase H family member (rnh-1.0) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE33660 WBGene00004382 locus:rnh-1.0 status:Confirmed UniProt:Q86MG7 protein_id:AAO91712.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE33660 WBGene00004382 locus:rnh-1.0 status:Confirmed UniProt:Q86MG7 protein_id:CCD70468.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Ribonuclease H1 OS=Caenorhabditis elegans GN=rnh-1.0 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 251 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    ribonuclease H activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKNDQYYAV ARGKQVGIYR TWNECKTQID GFQNARFKKF ATEAEARKFV ADNMSVPGSK  60
   61 PVTPAVSTSS ATRKRTHEGT KFTEAKKMKT EEEVIDPEFA NAPVVYTDGA CSSNGTKNAK 120
  121 AGWGVYWGDD SEDNEFGPVY GAPTNNRGEL IAVQKAIEKA IEKRLPKVVI KTDSNLLVQS 180
  181 MNIWIHGWKR KGWKTSTGSE VLNQDVLMKI DNLRQKLKVK FLHVRGHAGI DGNEKADELA 240
  241 RKGAQMFIKR S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] PSI-BLAST 5.69897 No description for 2iajB was found.
    2 View Details [99..251] PSI-BLAST 44.69897 STRUCTURAL STUDY OF MUTANTS OF ESCHERICHIA COLI RIBONUCLEASE HI WITH ENHANCED THERMOSTABILITY

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ribonuclease activity
    		•  5.30591758406946 bayes_pls_golite062009
  • exoribonuclease activity
    		•  3.71639182685131 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  3.59362615133405 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  3.1992647486402 bayes_pls_golite062009
  • exonuclease activity
    		•  3.13676176369406 bayes_pls_golite062009
  • nuclease activity
    		•  3.11657409772275 bayes_pls_golite062009
  • ribonuclease H activity
    		•  2.91966688044755 bayes_pls_golite062009
  • endonuclease activity
    		•  2.63074055051349 bayes_pls_golite062009
  • endoribonuclease activity
    		•  2.59247838057313 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.57498413015114 bayes_pls_golite062009
  • hydrolase activity
    		•  2.41899414621161 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  2.04408785855894 bayes_pls_golite062009
  • DNA polymerase activity
    		•  1.82615627615268 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  1.68530265026203 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  1.44123900197846 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.28926675473754 bayes_pls_golite062009
  • catalytic activity
    		•  1.25233849524628 bayes_pls_golite062009
  • binding
    		•  1.20709976964365 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.12235348738959 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  1.1219517187744 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.10433412699603 bayes_pls_golite062009
  • DNA binding
    		•  0.710663468386339 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.708753843279937 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.598360955770972 bayes_pls_golite062009
    		• 0.49473250705373 bayes_pls_golite062009
  • transcription factor activity
    		•  0.332903382446869 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  0.278838342302102 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  0.261428436029202 bayes_pls_golite062009
  • protein binding
    		•  0.242714557118293 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.0701825322473915 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle