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Protein Overview: taf-13

General Information:
Name(s) found: taf-13 / CE33030 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00006397 locus:taf-13 status:Confirmed UniProt:Q17957 protein_id:CAA90114.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 121 amino acids

    Gene Ontology:
    Cellular Component: transcription factor complex [IEALink to PubMed article]
    Biological Process: transcription initiation [IEALink to PubMed article]
    Molecular Function: RNA polymerase II transcription factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDEEDLFGS DAEDDKEKVV NPEDKKHVLR RDLRSMVYGF GDDKEPYDKT LDTLEAIVLN  60
   61 YIKELCQLAM KVGKPDKMAL EDIHYLIRRD PKKFSRVKDL LSMSEELKKA RKQFEDMKPQ 120
  121 L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..121] FFAS03 0.991 Negative cofactor 2, NC2, alpha chain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  8.88482968293417 bayes_pls_golite062009
  • DNA binding
    		•  4.00167809338753 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.91807454227165 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  3.78067108255869 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.72299085850948 bayes_pls_golite062009
  • binding
    		•  3.67149228723241 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.02428691626433 bayes_pls_golite062009
  • transcription factor activity
    		•  2.18855864512878 bayes_pls_golite062009
  • protein binding
    		•  1.22636497573761 bayes_pls_golite062009
  • transcription activator activity
    		•  1.12739348005764 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.03060091158028 bayes_pls_golite062009
  • transcription factor binding
    		•  1.01773884290535 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.976797801726735 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.840442755533537 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.621482805601238 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.0919482386963733 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle