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Protein Overview: CE33003

General Information:
Name(s) found: CE33003 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00022358 status:Partially_confirmed UniProt:Q9BKW4 protein_id:CCD71466.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 724 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: protein modification process [IEALink to PubMed article]
    ubiquitin cycle [IEALink to PubMed article]
    Molecular Function: ubiquitin-protein ligase activity [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVQTVVHGY PPNTDNETEL LRVRLLRGTK LGKRDLLGVC SPYCMIRLEN SNGDTVDEVQ  60
   61 VETKKKTRNP TWNSVFTFRV TRACQMKILV YDENRLRKDV LMGFVSRTLN DGLITTQAPN 120
  121 PEEYALQSGT ASKGKSIGSL FLSFHFMPSS SDNSPSDSTA DLQQTSSGMP QGWEEREDGN 180
  181 GRTVYVNHAL RTTQFTPPES VSNGNVDAIT EQSVIEETRR RRDNYEHRSQ VTDEPSDTTI 240
  241 VSNELTAIDD AMRANFERGG GHVEEEEDEL RLPDGWDMQV APNGRTFFID HRTKTTTWTD 300
  301 PRPGAATRVP LLRGKTDDEI GALPAGWEQR VHADGRVFFI DHNRRRTQWE DPRFENENIA 360
  361 GPAVPYSRDY KRKVEYLRSR LPKPNSNSGK CDMVVHRDTL FEDSYRHIMD KKDYDLRNKL 420
  421 WIEFFGETGL DYGGVTREWF FLLSHQIFNP YYGLFEYSAT DNYTLQINPH SEACNPEHLS 480
  481 YFHFIGRIIG MAIYHGKLLD AFFIRPFYKM MLGKKITLFD MESVDNEYYN SLIYVKDNDP 540
  541 ADLELTFSLD DSIFGETQNI ELIPNGANVP VTEDNKEEYI EAVVPSNLLR LFDANELELL 600
  601 MCGLQKIDVK DWKANTIYKG GYGPSSQVVH NFWKCILSFD NEMRARVLQF VSGTSRVPMN 660
  661 GFRELYGSNG LQKFTIERWG SADMLPRAHT CFNRLDLPPY TTFKELKSKL LTAIENSEIF 720
  721 SGVD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..273] PSI-BLAST 33.30103 Synaptogamin I
    2 View Details [274..344] FFAS03 4.01 Splicing factor prp40
    3 View Details [345..724] PSI-BLAST 106.0 No description for 2oniA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  7.10194828712949 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  6.82547847405261 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  6.04482261304601 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  5.16615441408338 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.182048695645 bayes_pls_golite062009
  • binding
    		•  2.56070278040924 bayes_pls_golite062009
  • protein binding
    		•  2.42069774848849 bayes_pls_golite062009
  • transcription activator activity
    		•  2.05338377709657 bayes_pls_golite062009
  • transcription factor binding
    		•  1.94857953695695 bayes_pls_golite062009
  • ligase activity
    		•  1.92115554795958 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.79381302696181 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.7678419433602 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.67777735708173 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.67021314973391 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  0.9455445085372 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  0.863094487787088 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  0.863094487787088 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  0.863094487787088 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.782679886083722 bayes_pls_golite062009
  • transferase activity
    		•  0.385387347513497 bayes_pls_golite062009
  • catalytic activity
    		•  0.231344568578849 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle