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Protein Overview: ltd-1

General Information:
Name(s) found: ltd-1 / CE32687 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00003089 locus:ltd-1 status:Confirmed UniProt:G5EF51 protein_id:CAA87787.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 723 amino acids

    Gene Ontology:
    Cellular Component: cell-cell junction [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: cytokinesis [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    molecular_function [NDLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKQHCNRC GKQVYPTDKV GPLKDSTFFH QGCFKCYICG TRLALKTYCN NRNDINDKEV  60
   61 YCSNHVPIAG PHDLPMASTN GSGKNLENNN HVKNGNWIDA GLSDMKIAHA MKATQVARPY 120
  121 PKISHEGAKY VVDYDTQTRL ELLHRKDEDD LYESFQDKRV REAEEFEKEN TEEWEKALAE 180
  181 FAKKYEKGQS NMKKDDLIRQ LTIKREKKLE TLHTKRKERE RHQTAELVDR QAKEMLELFK 240
  241 ASRSEYSNLQ YPSTPPPPVP PSCSKREIYT TTDYFSSIDE VAIHCARNEV ASFTDLIRTL 300
  301 SSGARSDVDV ARAIYRWITI KNLNTMIFDD SIQNDTPMGL LRGIKYGTES YHVLFKRLCS 360
  361 YAGLHCVVIK GFSKSAGYQP GYSFDDHRFR NTWNAVFLDG SWRFVQCNWG ARHLVNAKDG 420
  421 SHEAKTDGNL RYEYDDHYFM TDSEEFIYEF FPSDHAWQLL PRPLSLLQFE RIPFVRSLFF 480
  481 KYNLSFIDNK LESTVYTDKS GAASISIRLP PKGDSLIFHY NLKFFDSEEN TISGMSLKRF 540
  541 VMQSVTEDVV TFRVHAPSTR PLLLDIFANS VSSGAYLTGQ PIKFKSVCKF KVVCESLQVI 600
  601 MVPLPECASG EWGPAKATRL FGLLPISHPD AIINTGRYVE IRFRMTRPLS EFVASLHRNR 660
  661 TDDRALQACT RSALKGDMVY IQIEFPGEGQ YGLDIYTRQD DQLINGKQLL THCCKYLIHS 720
  721 RNC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..153] PSI-BLAST 18.69897 Cysteine-rich (intestinal) protein, CRP, CRIP
    2 View Details [154..526] PSI-BLAST 11.522879 Transglutaminase N-terminal domain; Transglutaminase, two C-terminal domains; Transglutaminase catalytic domain
    3 View Details [527..723] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.270879137859077 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.529663942126259 bayes_pls_golite062009
  • hydrolase activity
    		•  0.16837900182603 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle