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Protein Overview: CE28327

General Information:
Name(s) found: CE28327 [WormBase]
Description(s) found:
Found 12 descriptions.
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  • WBGene00018391 status:Partially_confirmed TR:O02092 protein_id:AAC71124.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 232 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPEIERKSH LAYQVARFEA VAMGFPVQYR QVVVEFYYHG RLDGSSGTLA TAVGLLALFT  60
   61 GVEISPRFAI TGSLDVFGWP PYCCLFSKMS SGGGNQKSDG QVEEDAAECK FPKEFETTTC 120
  121 DALLTAEVYL LLEHRRQSSE SKDEIEEMSE VFIKTLNYAR RMSRFKNRET IRAVRAIFSE 180
  181 KHLHKFEVAQ IANLCPENAE EAKALVPSLE NKIEESELEE VLKDLQSKRT FQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 35.154902 Catalytic domain of E.coli Lon protease
    2 View Details [143..232] PSI-BLAST 25.522879 Subunits Rpb4 and Rpb7 of human RNA polymerase II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleotidyltransferase activity
    		•  4.54967057318159 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  3.65740283278356 bayes_pls_golite062009
  • transferase activity
    		•  3.04205212257097 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.31170537288595 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  2.16830676862423 bayes_pls_golite062009
  • RNA binding
    		•  2.05527376734941 bayes_pls_golite062009
  • binding
    		•  2.02349222243183 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.94887328847363 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.90081280972069 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.7414193619112 bayes_pls_golite062009
  • DNA binding
    		•  1.58926319237456 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.38725999901881 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.31550811238109 bayes_pls_golite062009
  • mRNA binding
    		•  1.17402119891853 bayes_pls_golite062009
  • structural molecule activity
    		•  1.04534150109805 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • nuclease activity
    		•  0.69721312877891 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.477960254167 bayes_pls_golite062009
  • deacetylase activity
    		•  0.390237258762359 bayes_pls_golite062009
  • protein binding
    		•  0.214066724623027 bayes_pls_golite062009
    2
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.43501887532465 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.43501887532465 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  5.88847066010291 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  3.86808684657182 bayes_pls_golite062009
  • transferase activity
    		•  3.42143089321218 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.4721848902664 bayes_pls_golite062009
  • binding
    		•  2.44438550013082 bayes_pls_golite062009
  • catalytic activity
    		•  1.17990683373825 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  0.8583308140751 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  0.8583308140751 bayes_pls_golite062009
  • protein binding
    		•  0.520045897607933 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.430689791429257 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.35631508447468 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.288686121121112 bayes_pls_golite062009
  • ribonuclease III activity
    		•  0.0092766021353235 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.59

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle