YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: lin-29

General Information:
Name(s) found: lin-29 / CE28257 [WormBase]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • WBGene00003015 locus:lin-29 status:Confirmed UniProt:G5EGB2 protein_id:CAB60308.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 459 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    regulation of development, heterochronic [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    oviposition [IMPLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQTVLDSAF NSPVDSGIAG TTTGSGSTTH FGVGTNFKVS VRSSSRSTDG TDSTDGANSD  60
   61 NVTGSTGSTP AHHSITNLNM ALSQHSIDSA TAASSTNPFP HFNQADLLNF HQNSLLPHHM 120
  121 FSQFGRYPQF EQKPDVGVLQ QQMQMREAKP YKCTQCVKAF ANSSYLSQHM RIHLGIKPFG 180
  181 PCNYCGKKFT QLSHLQQHIR THTGEKPYKC KFTGCDKAFS QLSNLQSHSR CHQTDKPFKC 240
  241 NSCYKCFTDE QSLLDHIPKH KESKHLKIHI CPFCGKSYTQ QTYLQKHMTK HADRSKASNF 300
  301 GNDVVPADPF DPSLLSWNPM QGMGDNAHDS SSFNISSLTD QFAANTMIGS QSTNYNPAFQ 360
  361 NSAFSQLFNI RNNRYLSEYP TSTKNGERAP GFNMITPLEN IQRYNGSSSS ATAVVTATGS 420
  421 AVVSSTPSST SSSSAGSSSS QGGVFNPQSL INNMKNHSY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] PSI-BLAST 9.522879 Transcription factor IIIA, TFIIIA
    2 View Details [149..293] PSI-BLAST 19.0 Five-finger GLI1
    3 View Details [294..459] PSI-BLAST 56.522879 No description for 2i13A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  3.71642591026275 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.66965352784412 bayes_pls_golite062009
  • DNA binding
    		•  3.60136746748155 bayes_pls_golite062009
  • transcription factor activity
    		•  2.54048357633122 bayes_pls_golite062009
  • binding
    		•  2.46754839887217 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.40376744272574 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.29326096340736 bayes_pls_golite062009
  • chromatin binding
    		•  1.30140469366308 bayes_pls_golite062009
  • transcription activator activity
    		•  1.29100548621048 bayes_pls_golite062009
  • protein binding
    		•  1.00484935878505 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.73552256979331 bayes_pls_golite062009
  • transcription factor binding
    		•  0.53246783159686 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.52093073106685 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.503526851907562 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  3.71642591026275 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.66965352784412 bayes_pls_golite062009
  • DNA binding
    		•  3.60136746748155 bayes_pls_golite062009
  • transcription factor activity
    		•  2.54048357633122 bayes_pls_golite062009
  • binding
    		•  2.46754839887217 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.40376744272574 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.29326096340736 bayes_pls_golite062009
  • chromatin binding
    		•  1.30140469366308 bayes_pls_golite062009
  • transcription activator activity
    		•  1.29100548621048 bayes_pls_golite062009
  • protein binding
    		•  1.00484935878505 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.73552256979331 bayes_pls_golite062009
  • transcription factor binding
    		•  0.53246783159686 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.52093073106685 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.503526851907562 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle