| Protein: | lin-29 |
| Organism: | Caenorhabditis elegans |
| Length: | 459 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-29.
| Description | E-value | Query Range |
Subject Range |
|
|
660.0 | [0..4] | [458..2427] |
|
Region A: Residues: [1-148] |
1 11 21 31 41 51
| | | | | |
1 MDQTVLDSAF NSPVDSGIAG TTTGSGSTTH FGVGTNFKVS VRSSSRSTDG TDSTDGANSD 60
61 NVTGSTGSTP AHHSITNLNM ALSQHSIDSA TAASSTNPFP HFNQADLLNF HQNSLLPHHM 120
121 FSQFGRYPQF EQKPDVGVLQ QQMQMREA
|
| Detection Method: |  |
| Confidence: | 9.522879 |
| Match: | 1tf3A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.71642591026275 | bayes_pls_golite062009 |
| transcription regulator activity | 3.66965352784412 | bayes_pls_golite062009 |
| DNA binding | 3.60136746748155 | bayes_pls_golite062009 |
| transcription factor activity | 2.54048357633122 | bayes_pls_golite062009 |
| binding | 2.46754839887217 | bayes_pls_golite062009 |
| transcription repressor activity | 2.40376744272574 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.29326096340736 | bayes_pls_golite062009 |
| chromatin binding | 1.30140469366308 | bayes_pls_golite062009 |
| transcription activator activity | 1.29100548621048 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.73552256979331 | bayes_pls_golite062009 |
| transcription factor binding | 0.53246783159686 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.52093073106685 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.503526851907562 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [149-293] |
1 11 21 31 41 51
| | | | | |
1 KPYKCTQCVK AFANSSYLSQ HMRIHLGIKP FGPCNYCGKK FTQLSHLQQH IRTHTGEKPY 60
61 KCKFTGCDKA FSQLSNLQSH SRCHQTDKPF KCNSCYKCFT DEQSLLDHIP KHKESKHLKI 120
121 HICPFCGKSY TQQTYLQKHM TKHAD
|
| Detection Method: | |
| Confidence: | 19.0 |
| Match: | 2gliA |
| Description: | Five-finger GLI1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 3.71642591026275 | bayes_pls_golite062009 |
| transcription regulator activity | 3.66965352784412 | bayes_pls_golite062009 |
| DNA binding | 3.60136746748155 | bayes_pls_golite062009 |
| transcription factor activity | 2.54048357633122 | bayes_pls_golite062009 |
| binding | 2.46754839887217 | bayes_pls_golite062009 |
| transcription repressor activity | 2.40376744272574 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.29326096340736 | bayes_pls_golite062009 |
| chromatin binding | 1.30140469366308 | bayes_pls_golite062009 |
| transcription activator activity | 1.29100548621048 | bayes_pls_golite062009 |
| protein binding | 1.00484935878505 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.73552256979331 | bayes_pls_golite062009 |
| transcription factor binding | 0.53246783159686 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.52093073106685 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.503526851907562 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
|
Region A: Residues: [294-459] |
1 11 21 31 41 51
| | | | | |
1 RSKASNFGND VVPADPFDPS LLSWNPMQGM GDNAHDSSSF NISSLTDQFA ANTMIGSQST 60
61 NYNPAFQNSA FSQLFNIRNN RYLSEYPTST KNGERAPGFN MITPLENIQR YNGSSSSATA 120
121 VVTATGSAVV SSTPSSTSSS SAGSSSSQGG VFNPQSLINN MKNHSY
|
| Detection Method: | |
| Confidence: | 56.522879 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
