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Protein Overview: pbs-1

General Information:
Name(s) found: pbs-1 / CE25941 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00003947 locus:pbs-1 Proteasome subunit beta type status:Confirmed UniProt:Q966I8 protein_id:CCD72799.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 239 amino acids

    Gene Ontology:
    Cellular Component: proteasome core complex [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    ubiquitin-dependent protein catabolic process [IEALink to PubMed article]
    Molecular Function: endopeptidase activity [IEALink to PubMed article]
    threonine-type endopeptidase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDEKRKAIP AIGFYPQEEI STGTTLIAME YNGGVVVGTD SRTSAGSFIT SRATNKITPI  60
   61 TDNMVVCRSG SAADTQAIAD IAKYHIDVYT MTENKPVTIY RSSQIFRQFL YNYREQLSAS 120
  121 VLVAGWDEEL GGQVYAIPIG GFVSRQRSTA SGSGSTFVQG FLDSQWRPNL TLEECKAIVK 180
  181 QAVGLATFRD GSSGGVVRLA VINKAGSQFE LFRPDKPGFP FVQTPTPHLS FPPHIEQVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] PSI-BLAST 43.154902 Proteasome beta subunit (catalytic)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • endopeptidase activity
    		•  6.91642761177919 bayes_pls_golite062009
  • peptidase activity
    		•  6.84511694091156 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  6.5973571808298 bayes_pls_golite062009
  • hydrolase activity
    		•  4.47652590304822 bayes_pls_golite062009
  • threonine-type endopeptidase activity
    		•  2.98214579292788 bayes_pls_golite062009
  • threonine-type peptidase activity
    		•  2.98214579292788 bayes_pls_golite062009
  • catalytic activity
    		•  1.19663085909195 bayes_pls_golite062009
  • binding
    		•  1.18139971903068 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.448212653390607 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle