Protein Overview: selb-1

General Information:
Name(s) found:	selb-1 / CE24853 [WormBase]
Description(s) found: Found 19 descriptions. SHOW ALL	WBGene00008133 locus:efsc-1 status:Confirmed UniProt:O62108 protein_id:CAB16862.2 [WormBase]
Organism:	Caenorhabditis elegans
Length:	500 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IEA] intracellular [IEA]
Biological Process:	selenocysteine incorporation [IEA] translational elongation [IEA] cellular biogenic amine metabolic process [IEA]
Molecular Function:	GTP binding [IEA] ATP binding [IEA] RNA binding [IEA] translation elongation factor activity [IEA] GTPase activity [IEA] transferase activity, transferring phosphorus-containing groups [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPPSTSSS VGPLNLGILG HVDSGKTTLT RRIAELGSTS AFDAHATSTT TDGIRRNTLD  60
   61 LGFSTMTSLS GRRLALIDCP GHSGLIRAVL AASTVFDMAI VIIDVVAGIQ PQTAEHLLLA 120
  121 SKFCPNRVII VLNKCDLAEK SKISESAKKV RKGLKSMGVD ENSPIVEMSL ADGYFKEEML 180
  181 QNLKLAIESR IFEPKRDEEG EFLIAIDHCF AIKGQGTVLT GTVIRGVLRL NTEIEFPALN 240
  241 EKRRVKTLET WKQRVGQVAA GARAAFLVAP SFDEHRFSRC ICGPLGTLKS TKFVLATVEP 300
  301 IQFFRKSINS KSKIHVAVAF ETVMAECQFL KEKENGEFEM LPSLLAPCQV LFSFEKSIFL 360
  361 PENYSNPFMA ARLEQQPGSG CRFAFSGIFS QILPENGKNL PPRFTRKCRK GHVERVEKDG 420
  421 FSAICTGMFK AETNFDVFRG FQICTSSGPR GKIEGAFGKS GKFRVTFAEK IDGILTEKEE 480
  481 ISLFLKKYHN ENRLVSYVPD

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
structural constituent of ribosome	3.43310971482123	bayes_pls_golite062009
structural molecule activity	3.19024260989331	bayes_pls_golite062009
translation elongation factor activity	3.12363774852502	bayes_pls_golite062009
nucleic acid binding	2.60981339834849	bayes_pls_golite062009
translation initiation factor activity	2.27248294660956	bayes_pls_golite062009
binding	2.263388192549	bayes_pls_golite062009
DNA binding	1.7904783386531	bayes_pls_golite062009
transcription regulator activity	1.68903321260301	bayes_pls_golite062009
translation regulator activity	1.62528736558737	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.60662288414996	bayes_pls_golite062009
transcription factor activity	0.603758349693077	bayes_pls_golite062009
translation termination factor activity	0.269303802954244	bayes_pls_golite062009
translation release factor activity	0.252222008028593	bayes_pls_golite062009
protein binding	0.242047208982959	bayes_pls_golite062009
ATP binding	0.1860481660648	bayes_pls_golite062009
adenyl ribonucleotide binding	0.152859582615242	bayes_pls_golite062009
adenyl nucleotide binding	0.138615225841109	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.63

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..500]	PSI-BLAST	46.69897	Crystal structure of translation elongation factor SelB from Methanococcus maripaludis in complex with GDP

Protein Overview: selb-1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: