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Protein Overview: rec-8

General Information:
Name(s) found: rec-8 / CE21236 [WormBase]
Description(s) found:
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  • WBGene00004333 locus:rec-8 status:Partially_confirmed UniProt:Q9XUB3 protein_id:CAB05309.1 [WormBase]
  • pir||T26080 hypothetical protein W02A2.6 - Caenorhabditis elegans [NCBI NR]
  • gi|4008407|emb|CAB05309.1| C. elegans protein W02A2.6, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17541986|ref|NP_502565.1| abnormal RECombination family member (rec-8) [Caenorhabditis elegans] [NCBI NR]
  • Meiotic recombination protein rec-8 OS=Caenorhabditis elegans GN=rec-8 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE21236 WBGene00004333 locus:rec-8 status:Partially_confirmed TR:Q9XUB3 protein_id:CAB05309.1 [wormpep150.fasta]
  • 21236 WBGene00004333 locus:rec-8 status:Partially_confirmed TR:Q9XUB3 protein_id:CAB05309.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • Rad21/Rec8 like protein, N-terminal, abnormal RECombination REC-8 (rec-8) [Caenorhabditis elegans]gi|4008407|emb|CAB05309.1| Hypothetical protein W02A2.6 [Caenorhabditis elegans]gi|7508799|pir||T26080 hypothetical protein W02A2.6 - Caenorhabditis elegan [nrdb_11152004_Chlamydomonas]
  • locus:rec-8 status:Partially_confirmed TR:Q9XUB3 protein_id:CAB05309.1 [wormpep115.fasta.reversed]
  • CE21236 locus:rec-8 status:Partially_confirmed TR:Q9XUB3 protein_id:CAB05309.1 [wormpep80.hongbin]
  • CE21236 WBGene00004333 locus:rec-8 status:Partially_confirmed UniProt:Q9XUB3_CAEEL protein_id:CAB05309.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE21236 WBGene00004333 locus:rec-8 status:Partially_confirmed UniProt:Q9XUB3_CAEEL protein_id:CAB05309.1| [wormORF-contam.fasta]
  • abnormal RECombination family member (rec-8) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein W02A2.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE21236 WBGene00004333 locus:rec-8 status:Partially_confirmed UniProt:Q9XUB3 protein_id:CAB05309.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE21236 WBGene00004333 locus:rec-8 status:Partially_confirmed UniProt:Q9XUB3 protein_id:CAB05309.1 Meiotic recombination protein rec-8 [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 781 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nuclear chromatin [IDALink to PubMed article]
    synaptonemal complex [IDALink to PubMed articleLink to PubMed article]
    condensed nuclear chromosome [IDALink to PubMed articleLink to PubMed article]
    Biological Process: reciprocal meiotic recombination [TASLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    synaptonemal complex assembly [IDALink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    meiotic chromosome movement towards spindle pole [IMPLink to PubMed article]
    meiosis [IMPLink to PubMed articleLink to PubMed article]
    double-strand break repair [IDALink to PubMed article]
    Molecular Function: damaged DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVSAEVIRK DAVFHVAWIL GTGDSKKLSR REILDQNLPE LCHSIIEMVP ERHRGSATKT  60
   61 GLYLLSLLTY GTVLIHQVQV DFLKRDVEKL KELMKKKSFI LLMAERFDRN QELQRKEDKF 120
  121 ARLRSKPIMC VEELDRVDLA HLQAIGDELG INGNPGDFIM MDALPNMNQW IDNNSELNAI 180
  181 YGCVEPYLRE KEITMHSTFV EGNGSNEHNK ERRNDAVIAD FSQLLFPEIP EITLGEKFPI 240
  241 DVDSRKRSAI LQEEQEEALQ LPKEASEIVQ EEPTKFVSIA LLPSETVEQP APQEPIQEPI 300
  301 QPIIEEPAPQ LELPQPELPP QLDAIDLVTI PASQQDMVVE YLQLINDLPD DENSRLPPLP 360
  361 KDLELFEDVI LPPPAKKSKV EEEEDALERA RRRPSSRPVT PINQTDLTDL HSTVRPEDPS 420
  421 FAIDSQIHDV LPQRKKSKRN LPIIHSDDLE IDEAVQKVLQ ADYSSLVRKK EDVIAKIPPK 480
  481 TDAVAVLMNL PEPVFSIGYR LPPEVRDMFK ACYNQAVGSP VSDDEEDEDE EEEEEYKYAK 540
  541 VCLLSPNRIV EDTLLLEEQP RQPEEFPSTD NINPPRQLQE NPVFENLEYE APPHPIRTAR 600
  601 TPTPIKDLKY SVISLFPTPE KRRETSIIAE LNLDPIPVEE IDPLLTMRTE EELENVRRRQ 660
  661 KSSLGVQFMR TDDLEEDTRR NRLFEDEERT RDAREDELFF YSSGSLLPNN RLNIHKELLN 720
  721 EAEARYPEWV NFNEFTADHD RKKAATAFEG LLLSLKNMKV EAKQEDPYFP ILVRHISHEE 780
  781 M

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] Pfam 50.124939 No description for PF04825.4 was found. No confident structure predictions are available.
    2 View Details [152..225] deduced N/A No confident structure predictions are available.
    3 View Details [226..400] MSA 2.234995 View MSA. No confident structure predictions are available.
    4 View Details [401..499] deduced N/A No confident structure predictions are available.
    5 View Details [500..781] FFAS03 3.34 Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  1.65575125073874 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.62045578914155 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.61185572577617 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.61031477595187 bayes_pls_golite062009
  • transporter activity
    		•  1.34247950737552 bayes_pls_golite062009
  • catalytic activity
    		•  1.31308081280876 bayes_pls_golite062009
  • ATPase activity
    		•  1.20608009608832 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.16797633455459 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  1.09982527274636 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.994474655821244 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.939870275434362 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.935725121707514 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.909291664302723 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.907985730737205 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.907576902118197 bayes_pls_golite062009
  • hydrolase activity
    		•  0.904320676318722 bayes_pls_golite062009
  • binding
    		•  0.64910342483548 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.277928899733879 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.277495587271799 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.274076046951509 bayes_pls_golite062009
  • nucleotide binding
    		•  0.263583537212074 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.76

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle