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Protein Overview: pbs-7

General Information:
Name(s) found: pbs-7 / CE20761 [WormBase]
Description(s) found:
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  • WBGene00003953 locus:pbs-7 status:Confirmed UniProt:P90868 protein_id:CAB03081.1 [WormBase]
  • pir||T22003 hypothetical protein F39H11.5 - Caenorhabditis elegans [NCBI NR]
  • gi|3892154|emb|CAB03081.1| C. elegans protein F39H11.5, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17508501|ref|NP_492354.1| Proteasome Beta Subunit family member (pbs-7) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE20761 WBGene00003953 locus:pbs-7 Yeast NIP80 protein like status:Confirmed TR:P90868 protein_id:CAB03081.1 [wormpep150.fasta]
  • 20761 WBGene00003953 locus:pbs-7 Yeast NIP80 protein like status:Confirmed TR:P90868 protein_id:CAB03081.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • proteasome Beta Subunit (26.7 kD) (pbs-7) [Caenorhabditis elegans]gi|3892154|emb|CAB03081.1| Hypothetical protein F39H11.5 [Caenorhabditis elegans]gi|7503016|pir||T22003 hypothetical protein F39H11.5 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:pbs-7 Yeast NIP80 protein like status:Confirmed TR:P90868 protein_id:CAB03081.1 [wormpep115.fasta.reversed]
  • CE20761 locus:pbs-7 Yeast NIP80 protein like status:Confirmed TR:P90868 protein_id:CAB03081.1 [wormpep80.hongbin]
  • CE20761 WBGene00003953 locus:pbs-7 Yeast NIP80 protein like status:Confirmed UniProt:P90868_CAEEL protein_id:CAB03081.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE20761 WBGene00003953 locus:pbs-7 Yeast NIP80 protein like status:Confirmed UniProt:P90868_CAEEL protein_id:CAB03081.1| [wormORF-contam.fasta]
  • Hypothetical protein F39H11.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Proteasome Beta Subunit family member (pbs-7) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE20761 WBGene00003953 locus:pbs-7 Yeast NIP80 protein like status:Confirmed UniProt:P90868 protein_id:CAB03081.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE20761 WBGene00003953 locus:pbs-7 status:Confirmed UniProt:P90868 protein_id:CAB03081.1 [wormpep246-ecoli-contam.fasta]
  • Proteasome Beta Subunit OS=Caenorhabditis elegans GN=pbs-7 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 236 amino acids

    Gene Ontology:
    Cellular Component: proteasome core complex [IEALink to PubMed article]
    Biological Process: embryonic cleavage [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    ubiquitin-dependent protein catabolic process [IEALink to PubMed article]
    Molecular Function: threonine-type endopeptidase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAHDEVQRT LNPTCTGTSV IALQYKTGVV VLTDRVVSYG KMARYKNVSR QYKVNDNVLI  60
   61 AFGGDHADFH WLQNVIERQV LLWKRFDQDI GPKALHGYLT SLLYAKRCKM NPVWNTLVVA 120
  121 GVEEEEKNNK ETSTPFIGVI TQKGCAYQVK HIATGLGAFL LNQAVEDEWR KKGEDLSREE 180
  181 AEAVLRKSLE LTLYHDCVAD NEFEIGRVDA TEGVVLGKEE KIIGDWSIAE TNCQYE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..236] PSI-BLAST 36.154902 Proteasome beta subunit (catalytic)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • endopeptidase activity
    		•  6.91642761177919 bayes_pls_golite062009
  • peptidase activity
    		•  6.84511694091156 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  6.5973571808298 bayes_pls_golite062009
  • hydrolase activity
    		•  4.47652590304822 bayes_pls_golite062009
  • threonine-type endopeptidase activity
    		•  2.98214579292788 bayes_pls_golite062009
  • threonine-type peptidase activity
    		•  2.98214579292788 bayes_pls_golite062009
  • catalytic activity
    		•  1.19663085909195 bayes_pls_golite062009
  • binding
    		•  0.982918122186083 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.448212653390607 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle