Protein Overview: CE20700

General Information:
Name(s) found:	CE20700 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00008948 Uridine kinase status:Confirmed UniProt:Q9U3I7 protein_id:CAA93462.1 [WormBase] pir\|\|T21110 hypothetical protein F19B6.1b - Caenorhabditis elegans [NCBI NR] gi\|3876093\|emb\|CAA93462.1\| C. elegans protein F19B6.1b, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] gi\|17539894\|ref\|NP_502350.1\| hypothetical protein F19B6.1 [Caenorhabditis elegans] [NCBI NR] [wormpep67.fasta] CE20700 WBGene00008948 status:Confirmed TR:Q9U3I7 protein_id:CAA93462.1 [wormpep150.fasta] 20700 WBGene00008948 status:Confirmed TR:Q9U3I7 protein_id:CAA93462.1 [wormpep130-phg-ecoli-orf-rand.fasta] uracil phosphoribosyltransferase -related (62.7 kD) (4N94) [Caenorhabditis elegans]gi\|3876093\|emb\|CAA93462.1\| Hypothetical protein F19B6.1b [Caenorhabditis elegans]gi\|7499405\|pir\|\|T21110 hypothetical protein F19B6.1b - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas] status:Confirmed TR:Q9U3I7 protein_id:CAA93462.1 [wormpep115.fasta.reversed] CE20700 status:Partially_confirmed TR:Q9U3I7 protein_id:CAA93462.1 [wormpep80.hongbin] CE20700 WBGene00008948 status:Confirmed UniProt:Q9U3I7_CAEEL protein_id:CAA93462.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE20700 WBGene00008948 status:Confirmed UniProt:Q9U3I7_CAEEL protein_id:CAA93462.1\| [wormORF-contam.fasta] F19B6.1b [Caenorhabditis elegans] [nr-271106-contam.fasta] Hypothetical protein F19B6.1b [Caenorhabditis elegans] [nr-271106-contam.fasta] CE20700 WBGene00008948 status:Confirmed UniProt:Q9U3I7 protein_id:CAA93462.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE20700 WBGene00008948 status:Confirmed UniProt:Q9U3I7 protein_id:CAA93462.1 Uridine kinase [wormpep246-ecoli-contam.fasta] Isoform of H2L2A8, Uridine kinase OS=Caenorhabditis elegans GN=CELE_F19B6.1 PE=1 SV=1 [CAEEL.fasta.20160308]
Organism:	Caenorhabditis elegans
Length:	555 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	hermaphrodite genitalia development [IMP] uracil salvage [IEA] biosynthetic process [IEA] reproduction [IMP]
Molecular Function:	nucleotide binding [IEA] ATP binding [IEA] uracil phosphoribosyltransferase activity [IEA] uridine kinase activity [IEA] nucleoside-triphosphatase activity [IEA] kinase activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAEKRDANV AASKGDANRK SVKIEDCPTY SHSSGSSVNE MVNQSGGDSE DSTSPRAAGC  60
   61 RTRRRTMSGG RAEHHLLTTK TGKKIYTKGR PPWYDKKGKS LKHPFVIGVC GGSASGKTTV 120
  121 AEKIVERLGI PWVTILSMDS FYKVLTPEEI KAAHESRYNF DGPNAFDFDL LYEVLKRLRE 180
  181 GKSVDVPVYD FNTHSRDPNS KMMYGADVLI FEGILAFHDE RIKNLMDMKV FVDTDGDLRL 240
  241 ARRIVRDVTD RGRDIDGIME QYFTFVKPAF DKYIAPCMDS ADLIVPRGGE NDVAIDMIVQ 300
  301 NVMAQLVERG YDRNQNNRDR HDLVRDDLPD CLPENLFILK ETPQVKGLVT FVRDRETSRD 360
  361 NHIFYSDRLM RILIEECMNH MPYKDVEIEM AGGRKTIGKR KDAQICGLPI MRAGECMETA 420
  421 LRSIVKDCVI GKILIQTNET TFDPELHYIR LPPHITRYKV IIMDATVTTG SAAMMAIRVL 480
  481 LDHDVKEEDI FVASLLMGQQ GAHALAYAFP KVKLITTAMD HQMTENCYLI PGMGNFGDRY 540
  541 YGTGLEQDMD EPFDM

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

No functions predicted.

Term	Confidence	Notes
nucleobase, nucleoside, nucleotide kinase activity	3.66392587433723	bayes_pls_golite062009
nucleotide kinase activity	2.24094813695083	bayes_pls_golite062009
kinase activity	2.0779386406753	bayes_pls_golite062009
binding	2.05253348982328	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	1.96697952975573	bayes_pls_golite062009
nucleic acid binding	1.60768715809391	bayes_pls_golite062009
DNA binding	1.11699929651302	bayes_pls_golite062009
RNA helicase activity	1.02424782546779	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
transcription regulator activity	0.989226939888218	bayes_pls_golite062009
RNA-dependent ATPase activity	0.95986988363392	bayes_pls_golite062009
ATP-dependent RNA helicase activity	0.94128341275411	bayes_pls_golite062009
hydrolase activity	0.533811513387322	bayes_pls_golite062009
adenylate kinase activity	0.447752711852745	bayes_pls_golite062009
protein binding	0.193768631623192	bayes_pls_golite062009
nucleotide binding	0.114848452385726	bayes_pls_golite062009
purine nucleotide binding	0.10713474095071	bayes_pls_golite062009
purine ribonucleotide binding	0.0916519414118148	bayes_pls_golite062009
ribonucleotide binding	0.0915913646217636	bayes_pls_golite062009
helicase activity	0.0775311459068899	bayes_pls_golite062009
transcription factor activity	0.0434163635422169	bayes_pls_golite062009

Term	Confidence	Notes
uracil phosphoribosyltransferase activity	3.97944228585882	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.91023158228049	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	3.07502596276449	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	2.97347277288245	bayes_pls_golite062009
transferase activity	2.73727660668741	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.53679639481311	bayes_pls_golite062009
catalytic activity	2.30431811394775	bayes_pls_golite062009
nucleobase binding	1.70525606708275	bayes_pls_golite062009
purine binding	1.24786927434743	bayes_pls_golite062009
transcription regulator activity	1.09798789282825	bayes_pls_golite062009
nucleic acid binding	1.07284130528063	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	0.947697983706416	bayes_pls_golite062009
DNA binding	0.854593555814443	bayes_pls_golite062009
diphosphotransferase activity	0.749909396904601	bayes_pls_golite062009
binding	0.691442295634288	bayes_pls_golite062009
amidophosphoribosyltransferase activity	0.360901350940423	bayes_pls_golite062009
transcription factor activity	0.339219342075596	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.148898393751978	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.95

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..103]	deduced	N/A	No confident structure predictions are available.
2	View Details	[104..330]	PSI-BLAST	45.0	Rapid structure determination of human uridine-cytidine kinase 2 using a conventional laboratory X-ray source and a single samarium derivative
3	View Details	[331..555]	PSI-BLAST	57.30103	Uracil PRTase

Protein Overview: CE20700

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: