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Protein Overview: CE20297

General Information:
Name(s) found: CE20297 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00013128 locus:dox-1 status:Confirmed UniProt:Q9XWF2 protein_id:CAA21720.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 404 amino acids

    Gene Ontology:
    Cellular Component: ribosome [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    translation [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    structural constituent of ribosome [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKHEKGSSK DLANRTKSKG LQKLKFFCQM CQKQCRDANG FKCHLTSEAH QRQLLLFAEN  60
   61 SNSYLRQFSN DFEKNFMQLL RTSYGTKRVR ANEVYNAFIK DKGHVHMNST VWHSLTGFVQ 120
  121 YLGSSGKCKI DEGDKGWYIA YIDQEALIRK EEDQRKQQQE KDDEERHMQI MDGMVQRGKE 180
  181 LAGDDEHEYE ATELIRDTPD QKIQLDLNLG ILDRKLDVKS GVASAKISIF DMPKVKKEDP 240
  241 DEPGPSQPSR KSGKKRSRSR SPAAKKFSKK SALDEIKEME ERKKERKNRK DYWMREGIVV 300
  301 KVITKSLGSE YYKAKGVVRK VVDDYTAQVK LDDGTVVKLD QEHVETVIPS LGRQMMIVNG 360
  361 AYRGQEATLE SIDEKRFSLR LKIASGPTRG RQIDVPYEDA SKLA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..60] FFAS03 1.25 Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa
    2 View Details [61..134] deduced N/A No confident structure predictions are available.
    3 View Details [135..347] PSI-BLAST 4.154902 Heavy meromyosin subfragment
    4 View Details [348..404] PSI-BLAST 29.522879 No description for 2ckkA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  3.3313734687716 bayes_pls_golite062009
  • DNA binding
    		•  3.15523680513517 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.13450410278168 bayes_pls_golite062009
  • binding
    		•  2.79894364685962 bayes_pls_golite062009
  • transcription factor activity
    		•  2.20435466497656 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.75169697620651 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  1.44934603674695 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.39128012329158 bayes_pls_golite062009
  • transcription activator activity
    		•  1.29160378137114 bayes_pls_golite062009
  • protein binding
    		•  0.852654490075478 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.772384703325109 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.628218277487796 bayes_pls_golite062009
  • transcription factor binding
    		•  0.565898381175308 bayes_pls_golite062009
  • chromatin binding
    		•  0.530600410029043 bayes_pls_golite062009
  • catalytic activity
    		•  0.263007611601737 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.0453997626048568 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle