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Protein Overview: CE19834

General Information:
Name(s) found: CE19834 [WormBase]
Description(s) found:
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  • WBGene00009557 status:Confirmed UniProt:Q9XTZ1 protein_id:CAB07393.1 [WormBase]
  • pir||T21994 hypothetical protein F39B2.7 - Caenorhabditis elegans [NCBI NR]
  • gi|3876919|emb|CAB07393.1| C. elegans protein F39B2.7, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17507259|ref|NP_493573.1| hypothetical protein F39B2.7 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE19834 WBGene00009557 status:Confirmed TR:Q9XTZ1 protein_id:CAB07393.1 [wormpep150.fasta]
  • 19834 WBGene00009557 status:Confirmed TR:Q9XTZ1 protein_id:CAB07393.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • GTP binding protein like (48.6 kD) (1P354Co) [Caenorhabditis elegans]gi|3876919|emb|CAB07393.1| Hypothetical protein F39B2.7 [Caenorhabditis elegans]gi|7500841|pir||T21994 hypothetical protein F39B2.7 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q9XTZ1 protein_id:CAB07393.1 [wormpep115.fasta.reversed]
  • CE19834 status:Confirmed TR:Q9XTZ1 protein_id:CAB07393.1 [wormpep80.hongbin]
  • CE19834 WBGene00009557 status:Confirmed UniProt:Q9XTZ1_CAEEL protein_id:CAB07393.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE19834 WBGene00009557 status:Confirmed UniProt:Q9XTZ1_CAEEL protein_id:CAB07393.1| [wormORF-contam.fasta]
  • Hypothetical protein F39B2.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F39B2.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE19834 WBGene00009557 status:Confirmed UniProt:Q9XTZ1 protein_id:CAB07393.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE19834 WBGene00009557 locus:mtcu-1 status:Confirmed UniProt:Q9XTZ1 protein_id:CAB07393.1 [wormpep246-ecoli-contam.fasta]
  • Nuclear encoded Mitochondrial TRNA Carboxymethyl-amino-methyl modification of Uridine residues OS=Caenorhabditis elegans GN=mtcu-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 439 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: tRNA modification [IEALink to PubMed article]
    Molecular Function: GTP binding [IEALink to PubMed article]
    nucleotide binding [IEALink to PubMed article]
    GTPase activity [IEALink to PubMed article]
    nucleoside-triphosphatase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIFALSSG TLPSAIAMFR VSGSQSLPVL RQLSRRKVWK PKTMKYTKLY DSESKIIDEA  60
   61 MAVYLPGPKT FTGEDTAEFF LHGSQAVAVK FASCLAGIQN VREAKRGEFT RRAFHNGKLS 120
  121 ISEVRGIDRL IKSRTEKERN AAFGQMRGGV RAIEIRKQLI QILSKLFVII DFGEHVNLEL 180
  181 REAQQDVSEI LHELNRMIKA WDGAERAQRG LDIVLYGRPN SGKSSILNQL AHDDVAIVSS 240
  241 IPGTTRDSLE TIIQINGVRC RLTDTAGVRQ KTNDVIEAEG IRRAQKRIQS ADIICVVVDP 300
  301 QFTSDDDVES ILNDVEVMRN REARVIIAKN KSDLSLKYPK LPSNFTTVST NATTDTGCKQ 360
  361 LQNCLGEIVD DLCPEASYLL DADLLRRCSF ELESAVTCND AAIMCSHLEV ALEQIGELTE 420
  421 GIVTESVLDG IFSKFCIGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..439] PSI-BLAST 81.69897 Structure of the GTP-binding protein TrmE from Thermotoga maritima

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methyltransferase activity
    		•  3.28983380541263 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  3.20782575104451 bayes_pls_golite062009
  • catalytic activity
    		•  1.65079399897053 bayes_pls_golite062009
  • transferase activity
    		•  1.3676947912529 bayes_pls_golite062009
  • coenzyme binding
    		•  1.08379167900905 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.913322399315129 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.738234102557832 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.73539642422624 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.70759024918936 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  0.68122080550778 bayes_pls_golite062009
  • ATP binding
    		•  0.60527666756293 bayes_pls_golite062009
  • binding
    		•  0.604868700215668 bayes_pls_golite062009
  • aminomethyltransferase activity
    		•  0.573831999310668 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.573214556107072 bayes_pls_golite062009
  • ligase activity
    		•  0.417681194526243 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.390949264169589 bayes_pls_golite062009
  • DNA binding
    		•  0.376487324624615 bayes_pls_golite062009
  • translation regulator activity
    		•  0.29096092258568 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.274994961137851 bayes_pls_golite062009
  • structural molecule activity
    		•  0.0558641287316701 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle