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Protein Overview: end-3

General Information:
Name(s) found: end-3 / CE18787 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00001311 locus:end-3 status:Partially_confirmed UniProt:Q9XUW7 protein_id:CAB04516.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 242 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ICLink to PubMed article][IEALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    mesodermal cell fate specification [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article][ISSLink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSNSFSSSS SSSNSPMSFD FGFPQFPEQV QFNEEGYGTP SPDVLQNMNY HHYPAQDMTT  60
   61 NSYNGGYDNS MQQNFMQPDN GAGYYNENYQ QMPDFQFPVQ NFDFTNQFEF TTPINDLQQS 120
  121 QTSINHTNPD NNENSMPEIP IDGGFNFFPA QEVQEWKPAR KASKNKIKKI STMHINSSCS 180
  181 NCGCRETKLW RRNEQGETEC NPCNLYERVK GHKRPQHLWN KPAAKRRRRP VAPLVDSNAF 240
  241 NF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..168] MSA 14.183996 View MSA. No confident structure predictions are available.
    2 View Details [169..242] PSI-BLAST 20.30103 Erythroid transcription factor GATA-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.52732993750126 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.70015379754395 bayes_pls_golite062009
  • DNA binding
    		•  1.65515523003574 bayes_pls_golite062009
  • ligand-dependent nuclear receptor activity
    		•  1.50367193346192 bayes_pls_golite062009
  • protein binding
    		•  1.41749048987708 bayes_pls_golite062009
  • transcription factor activity
    		•  1.14669021380366 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.0340476173844 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.01141398682075 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.894860415786407 bayes_pls_golite062009
  • transcription activator activity
    		•  0.6614529953701 bayes_pls_golite062009
  • transcription factor binding
    		•  0.20735798780397 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.10722537662857 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle