| Protein: | end-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 242 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for end-3.
| Description | E-value | Query Range |
Subject Range |
|
|
134.0 | [0..117] | [238..68] |
|
|
134.0 | [0..52] | [239..14] |
|
|
131.0 | [0..117] | [234..1] |
|
|
130.0 | [0..17] | [238..2] |
|
|
129.0 | [0..119] | [228..1] |
|
|
127.0 | [0..120] | [236..1] |
|
|
122.0 | [0..4] | [241..51] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MYSNSFSSSS SSSNSPMSFD FGFPQFPEQV QFNEEGYGTP SPDVLQNMNY HHYPAQDMTT 60
61 NSYNGGYDNS MQQNFMQPDN GAGYYNENYQ QMPDFQFPVQ NFDFTNQFEF TTPINDLQQS 120
121 QTSINHTNPD NNENSMPEIP IDGGFNFFPA QEVQEWKPAR KASKNKIK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [169-242] |
1 11 21 31 41 51
| | | | | |
1 KISTMHINSS CSNCGCRETK LWRRNEQGET ECNPCNLYER VKGHKRPQHL WNKPAAKRRR 60
61 RPVAPLVDSN AFNF
|
| Detection Method: | |
| Confidence: | 20.30103 |
| Match: | 2gatA |
| Description: | Erythroid transcription factor GATA-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.52732993750126 | bayes_pls_golite062009 |
| transcription regulator activity | 1.70015379754395 | bayes_pls_golite062009 |
| DNA binding | 1.65515523003574 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.50367193346192 | bayes_pls_golite062009 |
| protein binding | 1.41749048987708 | bayes_pls_golite062009 |
| transcription factor activity | 1.14669021380366 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.0340476173844 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.01141398682075 | bayes_pls_golite062009 |
| nucleic acid binding | 0.894860415786407 | bayes_pls_golite062009 |
| transcription activator activity | 0.6614529953701 | bayes_pls_golite062009 |
| transcription factor binding | 0.20735798780397 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.10722537662857 | bayes_pls_golite062009 |
