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Protein Overview: daf-19

General Information:
Name(s) found: daf-19 / CE17763 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00000914 locus:daf-19 RFX-like transcription factor daf-19 status:Confirmed UniProt:Q09555 protein_id:CAA88701.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 780 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNEEPVPST SSVLSAAEKN VKIETPSRKR KGLDIDALWR KKFKDVENQK SPEKSEKSEK  60
   61 TIKEEPLETH PSGERKLRSA SKDSKSLSKE THNTISTRSS SSGTPRKKME PEDVKPNIKM 120
  121 LKKSLPVSFQ CSNLNDGTVG DEMEVIQHST DDPNGTREEF DYNQIEYGNA VTPNGTYTLY 180
  181 APDSNYAPYY QYSNNMQSSP QDNAPYLVPA PQSPVSIDDA DSINLPNNQR ASPATVNWLF 240
  241 ENYEIGEGSL PRCELYDHYK KHCAEHRMDP VNAASFGKLI RSVFHNLKTR RLGTRGNSKY 300
  301 HYYGIRLKDS STLHSMQHPQ PQIIQNTYTP PMQLPQRDAY ADTVNQVAAI KYMDVEIPDK 360
  361 RARKDNSSSS SSCRDSVSPC MDLPAQQTIQ HTPVHSVIPS TQQPAPLHNN NVVSYVVTES 420
  421 DKAAMGKIDL PIVPFPDKDA LMATIGFRKL GVGEEELNSL IDIYEILCRE ILALIKNIDF 480
  481 ASVEDTWSKF WSGNFGVDRD HISALCTLDQ VQDYIIEVDL ALYQTIVDTL IPNVLLSELS 540
  541 TGMTQTCRTF AKNIDVYLRK SLMLANLGEF FVKKKIQAIK YLQQGLKRYT SLNHLAHASR 600
  601 GVLMKPEQVQ QMYQDYIRVD INTVHQQAGW ICGCDSVMVH HVNNAFKHNL QRMSAMEVWA 660
  661 EWLESIVDQV LAKYHDKPAN VIANVGKQFL LNWSFYTSMI IRDLTLRSAM SFGSFTLIRL 720
  721 LADDYMYYLI ESKIAKAGKQ QLITVIRADK DWPLTTNPQE YIVVANDNDE DLDLEKAGLL 780
  781

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] PSI-BLAST 3.522879 Sec24
    2 View Details [211..327] PSI-BLAST 20.39794 Class II MHC transcription factor RFX1
    3 View Details [328..616] deduced N/A No confident structure predictions are available.
    4 View Details [617..780] MSA 5.07198 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.98990675336286 bayes_pls_golite062009
  • DNA binding
    		•  3.4273272886116 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38054693035398 bayes_pls_golite062009
  • transcription factor activity
    		•  2.80110428028438 bayes_pls_golite062009
  • binding
    		•  2.18911933843505 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.58663416877618 bayes_pls_golite062009
  • transcription activator activity
    		•  0.53294679084865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.53285802828572 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.513853050429619 bayes_pls_golite062009
  • protein binding
    		•  0.035220363090062 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle