| Protein: | daf-19 |
| Organism: | Caenorhabditis elegans |
| Length: | 780 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for daf-19.
| Description | E-value | Query Range |
Subject Range |
|
|
666.0 | [0..1] | [780..1] |
|
Region A: Residues: [1-210] |
1 11 21 31 41 51
| | | | | |
1 MTNEEPVPST SSVLSAAEKN VKIETPSRKR KGLDIDALWR KKFKDVENQK SPEKSEKSEK 60
61 TIKEEPLETH PSGERKLRSA SKDSKSLSKE THNTISTRSS SSGTPRKKME PEDVKPNIKM 120
121 LKKSLPVSFQ CSNLNDGTVG DEMEVIQHST DDPNGTREEF DYNQIEYGNA VTPNGTYTLY 180
181 APDSNYAPYY QYSNNMQSSP QDNAPYLVPA
|
| Detection Method: |  |
| Confidence: | 3.522879 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [211-327] |
1 11 21 31 41 51
| | | | | |
1 PQSPVSIDDA DSINLPNNQR ASPATVNWLF ENYEIGEGSL PRCELYDHYK KHCAEHRMDP 60
61 VNAASFGKLI RSVFHNLKTR RLGTRGNSKY HYYGIRLKDS STLHSMQHPQ PQIIQNT
|
| Detection Method: | |
| Confidence: | 20.39794 |
| Match: | 1dp7P |
| Description: | Class II MHC transcription factor RFX1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.98990675336286 | bayes_pls_golite062009 |
| DNA binding | 3.4273272886116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38054693035398 | bayes_pls_golite062009 |
| transcription factor activity | 2.80110428028438 | bayes_pls_golite062009 |
| binding | 2.18911933843505 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.58663416877618 | bayes_pls_golite062009 |
| transcription activator activity | 0.53294679084865 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.53285802828572 | bayes_pls_golite062009 |
| transcription repressor activity | 0.513853050429619 | bayes_pls_golite062009 |
| protein binding | 0.035220363090062 | bayes_pls_golite062009 |
|
Region A: Residues: [328-616] |
1 11 21 31 41 51
| | | | | |
1 YTPPMQLPQR DAYADTVNQV AAIKYMDVEI PDKRARKDNS SSSSSCRDSV SPCMDLPAQQ 60
61 TIQHTPVHSV IPSTQQPAPL HNNNVVSYVV TESDKAAMGK IDLPIVPFPD KDALMATIGF 120
121 RKLGVGEEEL NSLIDIYEIL CREILALIKN IDFASVEDTW SKFWSGNFGV DRDHISALCT 180
181 LDQVQDYIIE VDLALYQTIV DTLIPNVLLS ELSTGMTQTC RTFAKNIDVY LRKSLMLANL 240
241 GEFFVKKKIQ AIKYLQQGLK RYTSLNHLAH ASRGVLMKPE QVQQMYQDY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [617-780] |
1 11 21 31 41 51
| | | | | |
1 IRVDINTVHQ QAGWICGCDS VMVHHVNNAF KHNLQRMSAM EVWAEWLESI VDQVLAKYHD 60
61 KPANVIANVG KQFLLNWSFY TSMIIRDLTL RSAMSFGSFT LIRLLADDYM YYLIESKIAK 120
121 AGKQQLITVI RADKDWPLTT NPQEYIVVAN DNDEDLDLEK AGLL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
