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Protein Overview: selb-1

General Information:
Name(s) found: selb-1 / CE17567 [WormBase]
Description(s) found:
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  • WBGene00008133 locus:efsc-1 status:Confirmed UniProt:O62109 protein_id:CAB16863.1 [WormBase]
  • pir||T19991 hypothetical protein C47B2.7a - Caenorhabditis elegans [NCBI NR]
  • gi|3874973|emb|CAB16863.1| C. elegans protein C47B2.7a, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17506079|ref|NP_493276.1| SELB (SelB homolog) translation factor for selenocysteine incorporation family member (selb-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE17567 WBGene00008133 status:Partially_confirmed TR:O62109 protein_id:CAB16863.1 [wormpep150.fasta]
  • 17567 WBGene00008133 status:Partially_confirmed TR:O62109 protein_id:CAB16863.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • protein SelB (1N573) [Caenorhabditis elegans]gi|3874973|emb|CAB16863.1| Hypothetical protein C47B2.7a [Caenorhabditis elegans]gi|7497543|pir||T19991 hypothetical protein C47B2.7a - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:O62109 protein_id:CAB16863.1 [wormpep115.fasta.reversed]
  • CE17567 status:Partially_confirmed TR:O62109 protein_id:CAB16863.1 [wormpep80.hongbin]
  • CE17567 WBGene00008133 locus:selb-1 status:Partially_confirmed UniProt:O62109_CAEEL protein_id:CAB16863.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE17567 WBGene00008133 locus:selb-1 status:Partially_confirmed UniProt:O62109_CAEEL protein_id:CAB16863.1| [wormORF-contam.fasta]
  • Hypothetical protein C47B2.7a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • C47B2.7a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE17567 WBGene00008133 locus:selb-1 status:Partially_confirmed TR:O62109 protein_id:CAB16863.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE17567 WBGene00008133 locus:selb-1 status:Partially_confirmed UniProt:O62109 protein_id:CAB16863.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE17567 WBGene00008133 locus:selb-1 status:Confirmed UniProt:O62109 protein_id:CAB16863.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE17567 WBGene00008133 locus:efsc-1 status:Confirmed UniProt:O62109 protein_id:CAB16863.1 [wormpep246-ecoli-contam.fasta]
  • Isoform of O62108, Eukaryotic Elongation Factor, SelenoCysteine-tRNA-specific OS=Caenorhabditis elegans GN=efsc-1 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 459 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: selenocysteine incorporation [IEALink to PubMed article]
    translational elongation [IEALink to PubMed article]
    cellular biogenic amine metabolic process [IEALink to PubMed article]
    Molecular Function: GTP binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]
    translation elongation factor activity [IEALink to PubMed article]
    GTPase activity [IEALink to PubMed article]
    transferase activity, transferring phosphorus-containing groups [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPPSTSSS VGPLNLGILG HVDSGKTTLT RRIAELGSTS AFDAHATSTT TDGIRRNTLD  60
   61 LGFSTMTSLS GRRLALIDCP GHSGLIRAVL AASTVFDMAI VISESAKKVR KGLKSMGVDE 120
  121 NSPIVEMSLA DGYFKEEMLQ NLKLAIESRI FEPKRDEEGE FLIAIDHCFA IKGQGTVLTG 180
  181 TVIRGVLRLN TEIEFPALNE KRRVKTLETW KQRVGQVAAG ARAAFLVAPS FDEHRFSRCI 240
  241 CGPLGTLKST KFVLATVEPI QFFRKSINSK SKIHVAVAFE TVMAECQFLK EKENGEFEML 300
  301 PSLLAPCQVL FSFEKSIFLP ENYSNPFMAA RLEQQPGSGC RFAFSGIFSQ ILPENGKNLP 360
  361 PRFTRKCRKG HVERVEKDGF SAICTGMFKA ETNFDVFRGF QICTSSGPRG KIEGAFGKSG 420
  421 KFRVTFAEKI DGILTEKEEI SLFLKKYHNE NRLVSYVPD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..459] PSI-BLAST 40.69897 Crystal structure of translation elongation factor SelB from Methanococcus maripaludis in complex with GDP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  3.43310971482123 bayes_pls_golite062009
  • structural molecule activity
    		•  3.19024260989331 bayes_pls_golite062009
  • translation elongation factor activity
    		•  3.12363774852502 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.01090004832643 bayes_pls_golite062009
  • translation initiation factor activity
    		•  2.27248294660956 bayes_pls_golite062009
  • translation regulator activity
    		•  2.20347076721097 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  2.18748808024313 bayes_pls_golite062009
  • binding
    		•  2.01866595777668 bayes_pls_golite062009
  • DNA binding
    		•  1.7904783386531 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.68903321260301 bayes_pls_golite062009
  • transcription factor activity
    		•  0.603758349693077 bayes_pls_golite062009
  • translation termination factor activity
    		•  0.269303802954244 bayes_pls_golite062009
  • translation release factor activity
    		•  0.252222008028593 bayes_pls_golite062009
  • protein binding
    		•  0.242047208982959 bayes_pls_golite062009
  • ATP binding
    		•  0.1860481660648 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.152859582615242 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.138615225841109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle