Protein Overview: selb-1

General Information:
Name(s) found:	selb-1 / CE17567 [WormBase]
Description(s) found: Found 20 descriptions. SHOW ALL	WBGene00008133 locus:efsc-1 status:Confirmed UniProt:O62109 protein_id:CAB16863.1 [WormBase]
Organism:	Caenorhabditis elegans
Length:	459 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IEA] intracellular [IEA]
Biological Process:	selenocysteine incorporation [IEA] translational elongation [IEA] cellular biogenic amine metabolic process [IEA]
Molecular Function:	GTP binding [IEA] ATP binding [IEA] RNA binding [IEA] translation elongation factor activity [IEA] GTPase activity [IEA] transferase activity, transferring phosphorus-containing groups [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPPSTSSS VGPLNLGILG HVDSGKTTLT RRIAELGSTS AFDAHATSTT TDGIRRNTLD  60
   61 LGFSTMTSLS GRRLALIDCP GHSGLIRAVL AASTVFDMAI VISESAKKVR KGLKSMGVDE 120
  121 NSPIVEMSLA DGYFKEEMLQ NLKLAIESRI FEPKRDEEGE FLIAIDHCFA IKGQGTVLTG 180
  181 TVIRGVLRLN TEIEFPALNE KRRVKTLETW KQRVGQVAAG ARAAFLVAPS FDEHRFSRCI 240
  241 CGPLGTLKST KFVLATVEPI QFFRKSINSK SKIHVAVAFE TVMAECQFLK EKENGEFEML 300
  301 PSLLAPCQVL FSFEKSIFLP ENYSNPFMAA RLEQQPGSGC RFAFSGIFSQ ILPENGKNLP 360
  361 PRFTRKCRKG HVERVEKDGF SAICTGMFKA ETNFDVFRGF QICTSSGPRG KIEGAFGKSG 420
  421 KFRVTFAEKI DGILTEKEEI SLFLKKYHNE NRLVSYVPD

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
structural constituent of ribosome	3.43310971482123	bayes_pls_golite062009
structural molecule activity	3.19024260989331	bayes_pls_golite062009
translation elongation factor activity	3.12363774852502	bayes_pls_golite062009
nucleic acid binding	3.01090004832643	bayes_pls_golite062009
translation initiation factor activity	2.27248294660956	bayes_pls_golite062009
translation regulator activity	2.20347076721097	bayes_pls_golite062009
translation factor activity, nucleic acid binding	2.18748808024313	bayes_pls_golite062009
binding	2.01866595777668	bayes_pls_golite062009
DNA binding	1.7904783386531	bayes_pls_golite062009
transcription regulator activity	1.68903321260301	bayes_pls_golite062009
transcription factor activity	0.603758349693077	bayes_pls_golite062009
translation termination factor activity	0.269303802954244	bayes_pls_golite062009
translation release factor activity	0.252222008028593	bayes_pls_golite062009
protein binding	0.242047208982959	bayes_pls_golite062009
ATP binding	0.1860481660648	bayes_pls_golite062009
adenyl ribonucleotide binding	0.152859582615242	bayes_pls_golite062009
adenyl nucleotide binding	0.138615225841109	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.78

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..459]	PSI-BLAST	40.69897	Crystal structure of translation elongation factor SelB from Methanococcus maripaludis in complex with GDP

Protein Overview: selb-1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: