YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: eif-3.E

General Information:
Name(s) found: eif-3.E / CE17349 [WormBase]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • WBGene00001228 locus:eif-3.E Eukaryotic translation initiation factor 3 subunit E status:Confirmed UniProt:O61820 protein_id:CCD62105.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 432 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFDLTQRM APFLDLHLII PLLEFIEPRG IYDEKSLTEM HRQLLTKTNM IDSVIETYNG  60
   61 KPIPAAIEAK KKQIIKERDE LKSKVDSVVA ILEIPEVKEM MDNNRERDGN VRILEHLTQN 120
  121 HNFTVDMVDT LFKYSKFMYE CGNYTVASVC LYYYRNLVNQ ADPNYLNALY GKLASEILLQ 180
  181 EWEHARDDLL KLRAYIDANP FDTEWELVTQ RAWLMHWALF VYYNYPKGRD EIIEMFLNQQ 240
  241 PYLNAIQVLA PHLLRYLAVA VVTSKSRQKN SLKDLVKVID IERHSYKDPV TDFLTCLYIK 300
  301 YDFDEAQEML QKCEEVLSND FFLTAVLGDF RESARLLIFE MFCRIHQCIT IEMLARRLNM 360
  361 SQEEAERWIV DLIRTYRIEG AKIDSKLGQV VMGVKSVSIH EQVMENTKRL TLRAQQIALQ 420
  421 LEKGRQDKVK AT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] Pfam 73.161151 No description for PF09440.1 was found. No confident structure predictions are available.
    2 View Details [141..300] MSA 1.227993 View MSA. No confident structure predictions are available.
    3 View Details [301..432] PSI-BLAST 4.30103 Solution structure of the PCI domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  5.14888099231537 bayes_pls_golite062009
  • DNA binding
    		•  4.75748996637652 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.59221092058767 bayes_pls_golite062009
  • transcription factor activity
    		•  4.04817135189241 bayes_pls_golite062009
  • binding
    		•  3.52874320222492 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.40118478364681 bayes_pls_golite062009
  • transcription activator activity
    		•  2.23968345764004 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.12651159396305 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.31063361175854 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.2152419300113 bayes_pls_golite062009
  • RNA binding
    		•  0.992043085614693 bayes_pls_golite062009
  • transcription factor binding
    		•  0.78051974537344 bayes_pls_golite062009
  • protein binding
    		•  0.753698599635855 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.742648546865457 bayes_pls_golite062009
  • structural molecule activity
    		•  0.740044103478869 bayes_pls_golite062009
  • hydrolase activity
    		•  0.140191206949582 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle