| Protein: | eif-3.E |
| Organism: | Caenorhabditis elegans |
| Length: | 432 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eif-3.E.
| Description | E-value | Query Range |
Subject Range |
|
|
447.0 | [0..1] | [431..1] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MSTFDLTQRM APFLDLHLII PLLEFIEPRG IYDEKSLTEM HRQLLTKTNM IDSVIETYNG 60
61 KPIPAAIEAK KKQIIKERDE LKSKVDSVVA ILEIPEVKEM MDNNRERDGN VRILEHLTQN 120
121 HNFTVDMVDT LFKYSKFMYE
|
| Detection Method: |  |
| Confidence: | 73.161151 |
| Match: | PF09440.1 |
| Description: | No description for PF09440.1 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [141-300] |
1 11 21 31 41 51
| | | | | |
1 CGNYTVASVC LYYYRNLVNQ ADPNYLNALY GKLASEILLQ EWEHARDDLL KLRAYIDANP 60
61 FDTEWELVTQ RAWLMHWALF VYYNYPKGRD EIIEMFLNQQ PYLNAIQVLA PHLLRYLAVA 120
121 VVTSKSRQKN SLKDLVKVID IERHSYKDPV TDFLTCLYIK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [301-432] |
1 11 21 31 41 51
| | | | | |
1 YDFDEAQEML QKCEEVLSND FFLTAVLGDF RESARLLIFE MFCRIHQCIT IEMLARRLNM 60
61 SQEEAERWIV DLIRTYRIEG AKIDSKLGQV VMGVKSVSIH EQVMENTKRL TLRAQQIALQ 120
121 LEKGRQDKVK AT
|
| Detection Method: | |
| Confidence: | 4.30103 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.14888099231537 | bayes_pls_golite062009 |
| DNA binding | 4.75748996637652 | bayes_pls_golite062009 |
| nucleic acid binding | 4.59221092058767 | bayes_pls_golite062009 |
| transcription factor activity | 4.04817135189241 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.40118478364681 | bayes_pls_golite062009 |
| transcription activator activity | 2.23968345764004 | bayes_pls_golite062009 |
| transcription repressor activity | 2.12651159396305 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.31063361175854 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.2152419300113 | bayes_pls_golite062009 |
| RNA binding | 0.992043085614693 | bayes_pls_golite062009 |
| transcription factor binding | 0.78051974537344 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.742648546865457 | bayes_pls_golite062009 |
| structural molecule activity | 0.740044103478869 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
