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Protein Overview: ttm-1

General Information:
Name(s) found: ttm-1 / CE16617 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00012712 locus:ttm-1 status:Confirmed UniProt:O45923 protein_id:CAA16328.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 410 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: cation transport [IEALink to PubMed article]
    Molecular Function: cation transmembrane transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISMISPSS IRLSSDKRDS SSSNLPANIE EDTQSVSSSD SGVSADSIDH HHHGHGHGHS  60
   61 HGGHGHSHTH NNDDSSSDCS GAGGGAHKHS HDEKYQKGRR AEKVLWAVAA LSAVFIAAEF 120
  121 VGGFWAQSLA IMTDAGHMLS DLLSFIISIF AIRCARLPAS KRLSFGYERA EVLGALTSVI 180
  181 ILWVLTTVLV VVAIQRIVNN EHEVDADVML ITAGVGVLFN IVMGLVLHFG TGGHGHTHGG 240
  241 HSSHGHAHDG KNVNVRAALI HVIGDLVQSI GVLIAALIIR FTGWTLADPI CTFLFSIIVL 300
  301 FTTVTVMRDI FFVLMEATPS HYDLSDVKKA LSALEGVKGV HDLHLWSIGM DKTAFSVHLA 360
  361 LESPNRAMEN VAEARSLIRR RFGVAVATVQ VEPFDEKIDS CDTCQQQETA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] MSA 1.393997 View MSA. No confident structure predictions are available.
    2 View Details [93..410] PSI-BLAST 53.69897 No description for 2qfiA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • cation transmembrane transporter activity
    		•  6.3253503604398 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  6.22189384650962 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  5.82185991246167 bayes_pls_golite062009
  • transporter activity
    		•  4.27173462293249 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  4.18558383943492 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.94511592355578 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  2.43294134632841 bayes_pls_golite062009
  • transition metal ion transmembrane transporter activity
    		•  2.32644140472297 bayes_pls_golite062009
  • efflux transmembrane transporter activity
    		•  1.98656970252979 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  1.95281540802467 bayes_pls_golite062009
  • cation channel activity
    		•  1.55011961058299 bayes_pls_golite062009
  • di-, tri-valent inorganic cation transmembrane transporter activity
    		•  1.31663166812163 bayes_pls_golite062009
  • binding
    		•  1.27456652114636 bayes_pls_golite062009
  • ion channel activity
    		•  1.01093555209783 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.963824080292546 bayes_pls_golite062009
  • channel activity
    		•  0.963824080292546 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.948079854416241 bayes_pls_golite062009
  • cadmium ion transmembrane transporter activity
    		•  0.661906409169955 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.490905558612378 bayes_pls_golite062009
  • iron ion transmembrane transporter activity
    		•  0.376948884172728 bayes_pls_golite062009
  • protein binding
    		•  0.311357063667067 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle