YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ttm-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISMISPSS IRLSSDKRDS SSSNLPANIE EDTQSVSSSD SGVSADSIDH HHHGHGHGHS  60
   61 HGGHGHSHTH NNDDSSSDCS GAGGGAHKHS HDEKYQKGRR AEKVLWAVAA LSAVFIAAEF 120
  121 VGGFWAQSLA IMTDAGHMLS DLLSFIISIF AIRCARLPAS KRLSFGYERA EVLGALTSVI 180
  181 ILWVLTTVLV VVAIQRIVNN EHEVDADVML ITAGVGVLFN IVMGLVLHFG TGGHGHTHGG 240
  241 HSSHGHAHDG KNVNVRAALI HVIGDLVQSI GVLIAALIIR FTGWTLADPI CTFLFSIIVL 300
  301 FTTVTVMRDI FFVLMEATPS HYDLSDVKKA LSALEGVKGV HDLHLWSIGM DKTAFSVHLA 360
  361 LESPNRAMEN VAEARSLIRR RFGVAVATVQ VEPFDEKIDS CDTCQQQETA

Type	Start	End	Confidence
Cytoplasmic	1	103	0.99
Transmembrane Helix	104	126	0.93
Non-Cytoplasmic	127	134	0.82
Transmembrane Helix	135	155	0.89
Cytoplasmic	156	171	0.91
Transmembrane Helix	172	194	0.91
Non-Cytoplasmic	195	208	0.84
Transmembrane Helix	209	232	0.87
Cytoplasmic	233	256	0.91
Transmembrane Helix	257	279	0.88
Non-Cytoplasmic	280	285	0.70
Transmembrane Helix	286	307	0.86
Cytoplasmic	308	410	0.96