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Protein Overview: CE11898

General Information:
Name(s) found: CE11898 [WormBase]
Description(s) found:
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  • WBGene00019498 Uncharacterized protein K07E8.7 status:Confirmed UniProt:O16686 protein_id:CCD72759.1 [WormBase]
  • pir||T32044 hypothetical protein K07E8.7 - Caenorhabditis elegans [NCBI NR]
  • gi|3915497|sp|O16686.1|YK27_CAEEL RecName: Full=Uncharacterized protein K07E8.7 [NCBI NR]
  • gi|2315726|gb|AAB66153.1| Hypothetical protein K07E8.7 [Caenorhabditis elegans] [NCBI NR]
  • gi|17534965|ref|NP_493778.1| hypothetical protein K07E8.7 [Caenorhabditis elegans] [NCBI NR]
  • Uncharacterized protein K07E8.7 OS=Caenorhabditis elegans GN=K07E8.7 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE11898 WBGene00019498 status:Partially_confirmed SW:O16686 protein_id:AAB66153.1 [wormpep150.fasta]
  • 11898 WBGene00019498 status:Partially_confirmed SW:O16686 protein_id:AAB66153.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • pseudouridine synthase (50.0 kD) (2A932) [Caenorhabditis elegans]gi|2315726|gb|AAB66153.1| Hypothetical protein K07E8.7 [Caenorhabditis elegans]gi|7505460|pir||T32044 hypothetical protein K07E8.7 - Caenorhabditis elegansgi|3915497|sp|O16686|YK27_CAEEL [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed SW:O16686 protein_id:AAB66153.1 [wormpep115.fasta.reversed]
  • CE11898 status:Partially_confirmed SW:O16686 protein_id:AAB66153.1 [wormpep80.hongbin]
  • CE11898 WBGene00019498 status:Partially_confirmed UniProt:YK27_CAEEL protein_id:AAB66153.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE11898 WBGene00019498 status:Partially_confirmed UniProt:YK27_CAEEL protein_id:AAB66153.1| [wormORF-contam.fasta]
  • Hypothetical protein K07E8.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Uncharacterized protein K07E8.7 [nr-271106-contam.fasta]
  • K07E8.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • hypothetical protein K07E8.7 [Caenorhabditis elegans] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • CE11898 WBGene00019498 status:Confirmed UniProt:O16686 protein_id:AAB66153.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE11898 WBGene00019498 status:Confirmed UniProt:O16686 protein_id:CCD72759.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE11898 WBGene00019498 status:Confirmed UniProt:O16686 protein_id:CCD72759.1 Uncharacterized protein K07E8.7 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 432 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [IEALink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]
    pseudouridine synthase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTTDVPEN QKSPKPSGKA DKRKIEEKPE NSSLKRKKFE DPNKKVDPLE ELPMKVPFKI  60
   61 VDGVRHLAPY WACYRTRTKG RWIGRKMVEV FSGEFLSTNR NYAKIACKMG RIYVNGEQMT 120
  121 DVDYVMRNGD RVEHWAHRHE HPIRDLPIRV ISETDDLFVV EKPPSLPVHT CGQYAIHTVL 180
  181 GQLRVNEGRT GLRVLHRLDR ATSGVLLFAK NYETDLEFKT TLKQGEWSKE YICKVDGVFP 240
  241 DEEQVCEQPI GPLVISMGIQ CVRPDGKDAK SRFRKLWSDG TQSVVQVHIE TGRTHQIRVH 300
  301 SQFLGHPIAG DQIYNSAVWG PTKGKNADYQ KSFDELCEDV RNTHKCENWH EKPNPEFEQR 360
  361 MEHLAADTTP ITPEAPSLTL EQRPEFDEIC QKCNVESKKV PENHFQLYLH CLKYETKKWS 420
  421 FKTEMPDWAV QK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..70] PSI-BLAST 18.221849 No description for 2uu9D was found.
    2 View Details [71..432] PSI-BLAST 76.69897 Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.19957135839682 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  3.78688422405974 bayes_pls_golite062009
  • isomerase activity
    		•  2.91720316078381 bayes_pls_golite062009
  • catalytic activity
    		•  2.02180970970004 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.21173188039059 bayes_pls_golite062009
  • binding
    		•  1.17570507184058 bayes_pls_golite062009
  • DNA binding
    		•  0.950713703876672 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.909704702595901 bayes_pls_golite062009
  • RNA binding
    		•  0.706879359688019 bayes_pls_golite062009
  • protein binding
    		•  0.260117304773608 bayes_pls_golite062009
  • transferase activity
    		•  0.237728328252954 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle