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Protein Overview: sqv-1

General Information:
Name(s) found: sqv-1 / CE04302 [WormBase]
Description(s) found:
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  • WBGene00005019 locus:sqv-1 status:Confirmed UniProt:G5EF65 protein_id:CCD68509.1 [WormBase]
  • pir||T15892 hypothetical protein D2096.4 - Caenorhabditis elegans [NCBI NR]
  • gi|24061781|gb|AAN39843.1| UDP-glucuronic acid decarboxylase [Caenorhabditis elegans] [NCBI NR]
  • gi|17539532|ref|NP_501418.1| SQuashed Vulva family member (sqv-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|1065948|gb|AAA81490.1| Squashed vulva protein 1 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE04302 WBGene00005019 locus:sqv-1 status:Confirmed TR:Q19003 protein_id:AAA81490.1 [wormpep150.fasta]
  • 04302 WBGene00005019 locus:sqv-1 status:Confirmed TR:Q19003 protein_id:AAA81490.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • SQuashed Vulva SQV-1, UDP-glucuronic acid decarboxylase (52.7 kD) (sqv-1) [Caenorhabditis elegans]gi|1065948|gb|AAA81490.1| Squashed vulva protein 1 [Caenorhabditis elegans]gi|7498253|pir||T15892 hypothetical protein D2096.4 - Caenorhabditis elegansgi| [nrdb_11152004_Chlamydomonas]
  • locus:sqv-1 status:Confirmed TR:Q19003 protein_id:AAA81490.1 [wormpep115.fasta.reversed]
  • CE04302 status:Predicted TR:Q19003 protein_id:AAA81490.1 [wormpep80.hongbin]
  • CE04302 WBGene00005019 locus:sqv-1 status:Confirmed UniProt:Q19003_CAEEL protein_id:AAA81490.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE04302 WBGene00005019 locus:sqv-1 status:Confirmed UniProt:Q19003_CAEEL protein_id:AAA81490.1| [wormORF-contam.fasta]
  • SQuashed Vulva family member (sqv-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Squashed vulva protein 1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • UDP-glucuronic acid decarboxylase [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE04302 WBGene00005019 locus:sqv-1 status:Confirmed UniProt:Q19003 protein_id:AAA81490.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE04302 WBGene00005019 locus:sqv-1 status:Confirmed UniProt:G5EF65 protein_id:CCD68509.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • SQuashed Vulva OS=Caenorhabditis elegans GN=sqv-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 467 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: carbohydrate metabolic process [IEALink to PubMed article]
    vulval development [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    oviposition [IMPLink to PubMed article]
    nucleotide-sugar metabolic process [IEALink to PubMed article]
    extracellular polysaccharide biosynthetic process [IEALink to PubMed article]
    GDP-mannose metabolic process [IEALink to PubMed article]
    steroid biosynthetic process [IEALink to PubMed article]
    galactose metabolic process [IEALink to PubMed article]
    cellular metabolic process [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity [IEALink to PubMed article]
    NADP or NADPH binding [IEALink to PubMed article]
    coenzyme binding [IEALink to PubMed article]
    catalytic activity [IEALink to PubMed article]
    UDP-glucose 4-epimerase activity [IEALink to PubMed article]
    steroid delta-isomerase activity [IEALink to PubMed article]
    dTDP-glucose 4,6-dehydratase activity [IEALink to PubMed article]
    ADP-glyceromanno-heptose 6-epimerase activity [IEALink to PubMed article]
    dTDP-4-dehydrorhamnose reductase activity [IEALink to PubMed article]
    GDP-mannose 4,6-dehydratase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPRRIRNN SISMATRGAC AVLITFFLIF VLITNTSNKS LSSDVIEKSE QKISQMEEEG  60
   61 RGDTIVEFNK NNIPDDTVSS LLERIKLLED ELSSMRTRMD DAENREGNAA NGDEIVAPLP 120
  121 TTKSFPSVRY RNEETRKRIL ITGGAGFVGS HLVDKLMLDG HEVIALDNYF TGRKKNVEHW 180
  181 IGHPNFEMVH HDVVNPYFVE VDQIYHLASP ASPPHYMYNP VKTIKTNTLG TINMLGLAKR 240
  241 VKATVLLAST SEVYGDPEVH PQPETYWGHV NTIGPRACYD EGKRVAESLM VAYNKQENIK 300
  301 IRIARIFNTF GPRMHMNDGR VVSNFIIQAL QDKPITIYGN GTQTRSFQYV TDLVDGLIKL 360
  361 MNSNYSLPVN IGNPEEHTIG QFATIIRDLV PGSTSEIVNL ESQQDDPQQR RPDIRRAAEQ 420
  421 ISWAPQVHMK DGLLKTVDYF RAEIDRNKRG GKPVPEPVRL AGLESRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] PSI-BLAST 8.522879 No description for 2z5lA was found.
    2 View Details [137..467] PSI-BLAST 81.221849 Crystal Structure of Human UDP-glucoronic acid decarboxylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • UDP-glucose 4-epimerase activity
    		•  2.13934644118967 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.03956654822048 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.82673050487418 bayes_pls_golite062009
  • binding
    		•  0.144628283348863 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle