YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sqv-1
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSPRRIRNN SISMATRGAC AVLITFFLIF VLITNTSNKS LSSDVIEKSE QKISQMEEEG  60
   61 RGDTIVEFNK NNIPDDTVSS LLERIKLLED ELSSMRTRMD DAENREGNAA NGDEIVAPLP 120
  121 TTKSFPSVRY RNEETRKRIL ITGGAGFVGS HLVDKLMLDG HEVIALDNYF TGRKKNVEHW 180
  181 IGHPNFEMVH HDVVNPYFVE VDQIYHLASP ASPPHYMYNP VKTIKTNTLG TINMLGLAKR 240
  241 VKATVLLAST SEVYGDPEVH PQPETYWGHV NTIGPRACYD EGKRVAESLM VAYNKQENIK 300
  301 IRIARIFNTF GPRMHMNDGR VVSNFIIQAL QDKPITIYGN GTQTRSFQYV TDLVDGLIKL 360
  361 MNSNYSLPVN IGNPEEHTIG QFATIIRDLV PGSTSEIVNL ESQQDDPQQR RPDIRRAAEQ 420
  421 ISWAPQVHMK DGLLKTVDYF RAEIDRNKRG GKPVPEPVRL AGLESRR

Type	Start	End	Confidence
Cytoplasmic	1	13	0.83
Transmembrane Helix	14	33	0.84
Non-Cytoplasmic	34	467	0.99