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Protein Overview: pdcd-2

General Information:
Name(s) found: pdcd-2 / CE03534 [WormBase]
Description(s) found:
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  • WBGene00011116 locus:pdcd-2 Vacuolar ATPase assembly integral membrane protein VMA21 homolog status:Confirmed UniProt:A5JYQ9 protein_id:CAN86606.1 [WormBase]
  • emb|CAA83627.1| Hypothetical protein R07E5.12 [Caenorhabditis elegans] [NCBI NR]
  • pir||D88428 protein R07E5.12 [imported] - Caenorhabditis elegans [NCBI NR]
  • gi|239977675|sp|A5JYQ9.1|VMA21_CAEEL RecName: Full=Vacuolar ATPase assembly integral membrane protein VMA21 [NCBI NR]
  • gi|17554510|ref|NP_497897.1| PDCD (mammalian ProgrammeD Cell Death protein) homolog family member (pdcd-2) [Caenorhabditis elegans] [NCBI NR]
  • gi|148472579|emb|CAN86606.1| C. elegans protein R07E5.10b, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Caenorhabditis elegans GN=pdcd-2 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE03534 WBGene00011118 status:Confirmed TR:Q21833 protein_id:CAA83627.1 [wormpep150.fasta]
  • 03534 WBGene00011118 status:Confirmed TR:Q21833 protein_id:CAA83627.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RNA binding protein like (11.4 kD) (3F508) [Caenorhabditis elegans]gi|3878951|emb|CAA83627.1| Hypothetical protein R07E5.12 [Caenorhabditis elegans]gi|25395692|pir||D88428 protein R07E5.12 [imported] - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q21833 protein_id:CAA83627.1 [wormpep115.fasta.reversed]
  • CE03534 status:Confirmed TR:Q21833 protein_id:CAA83627.1 [wormpep80.hongbin]
  • CE03534 WBGene00011116 locus:pdcd-2 status:Confirmed UniProt:A5JYQ9_CAEEL protein_id:CAN86606.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • C. elegans protein R07E5.10b, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • CE03534 WBGene00011116 locus:pdcd-2 status:Confirmed UniProt:A5JYQ9_CAEEL protein_id:CAN86606.1| [wormORF-contam.fasta]
  • CE03534 WBGene00011116 locus:pdcd-2 status:Confirmed TR:A5JYQ9 protein_id:CAN86606.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE03534 WBGene00011116 locus:pdcd-2 status:Confirmed UniProt:A5JYQ9 protein_id:CAN86606.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03534 WBGene00011116 locus:pdcd-2 status:Confirmed UniProt:A5JYQ9 protein_id:CAN86606.1 Vacuolar ATPase assembly integral membrane protein VMA21 homolog [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 102 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    apoptosis [IEALink to PubMed article]
    gamete generation [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSSSSEPS TMATLFPNFR DQEVQSAVKN LLTYSLVILI VPLASMFLLK QFFFEGLLGV  60
   61 SANDALTYSA IIAVVLVHVV LGIWLFAATK QEDRKKRENK QD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] Pfam 22.036212 No description for PF09446.1 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle