YRC Public Data Repository - Protein Structure Prediction

Protein:	pdcd-2
Organism:	Caenorhabditis elegans
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pdcd-2.

Description	E-value	Query Range	Subject Range
gi\|187025123, gi... - gi\|39591628\|emb\|CAE71205.1\| Hypothetical protein CBG18067 [Caenorhabditis briggsae], gi\|187025123\|em... gi\|157775289 - gi\|157775289\|ref\|XP_001665710.1\| hypothetical protein CBG18067 [Caenorhabditis briggsae AF16]	137.0	[0..9]	[102..1]
CE00672 - status:Confirmed UniProt:Q21821 protein_id:CAA83617.1	119.0	[0..22]	[102..107]
VMA21_DANRE - Vacuolar ATPase assembly integral membrane protein vma21 OS=Danio rerio GN=vma21 PE=3 SV=1	114.0	[0..1]	[102..1]
gi\|109514146, gi... - gi\|62667517\|ref\|XP_577054.1\| PREDICTED: hypothetical protein [Rattus norvegicus], gi\|109514146\|ref\|X...	110.0	[0..17]	[102..76]
gi\|83002417, gi\|... - gi\|94408802\|ref\|XP_993816.1\| PREDICTED: hypothetical protein LOC67048 isoform 1 [Mus musculus], gi\|8...	110.0	[0..17]	[102..76]
gi\|74009101 - gi\|74009101\|ref\|XP_538195.2\| PREDICTED: hypothetical protein XP_538195 [Canis familiaris]	107.0	[0..17]	[102..86]
gi\|76658818 - gi\|76658818\|ref\|XP_869782.1\| PREDICTED: hypothetical protein XP_864689 [Bos taurus]	107.0	[0..18]	[102..219]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSSSSEPS TMATLFPNFR DQEVQSAVKN LLTYSLVILI VPLASMFLLK QFFFEGLLGV  60
   61 SANDALTYSA IIAVVLVHVV LGIWLFAATK QEDRKKRENK QD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.036212
Match:	PF09446.1
Description:	No description for PF09446.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits