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Protein Overview: rpn-3

General Information:
Name(s) found: rpn-3 / CE00101 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00004460 locus:rpn-3 26S proteasome non-ATPase regulatory subunit 3 status:Confirmed UniProt:Q04908 protein_id:CCD66158.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 504 amino acids

    Gene Ontology:
    Cellular Component: proteasome complex [IEALink to PubMed article]
    Biological Process: embryonic cleavage [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: enzyme regulator activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKTGETVV EKMEVDEAKQ DVPATEPAKD LNAIAVENIK EQLAALDKGE EHLITRVLQV  60
   61 LPKTRKQIND NVLYKLVSSH LSSDAQFAEG MLKYLHYTPA ADTEVQPMDT SNVKTKSPKK 120
  121 GVKPVFASPE SDCYLRLLVL LHLYAQKKNT EALALGENQL TSIYNFDRRT LDGLAAKTLY 180
  181 FLCVIYEREG RLFDHQGFLN SRLRTATLRN FSESQAVLIC WLLRCYLINR QYQSAAHLVS 240
  241 KVAFPDNASN NDLARYMYYQ GRIKALQLDY NSAAGYFLQA QRKAPQEGAI GFKQAVQKWV 300
  301 VVIGLLQGEI PDRSVFRQPI YRKCLAHYLD LSRGVRDGDV ARFNHNLEQF KTQFEADDTL 360
  361 TLIVRLRQNV IKTAIKQISL AYSRIYIKDI AKKLYITNET ETEYIVAKAI ADGAIDAVIT 420
  421 SDVRDGPRYM QSSETADIYR TSEPQAHFDT RIRYCLELHN QAVKALRYPP KKKIAVETIE 480
  481 QAREREQQEL EFAKELADED DDDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] MSA 1.070995 View MSA. No confident structure predictions are available.
    2 View Details [97..309] PSI-BLAST 7.0 Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form)
    3 View Details [310..504] PSI-BLAST 7.522879 Solution structure of the PCI domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.50995556050336 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38144578566524 bayes_pls_golite062009
  • binding
    		•  3.33026160538031 bayes_pls_golite062009
  • DNA binding
    		•  3.30822066787723 bayes_pls_golite062009
  • transcription factor activity
    		•  2.60537570879007 bayes_pls_golite062009
  • hydrolase activity
    		•  2.30467124306022 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.32971938164691 bayes_pls_golite062009
  • transcription activator activity
    		•  1.08566311616647 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.95491822926452 bayes_pls_golite062009
  • protein binding
    		•  0.653872239015235 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.42135864069093 bayes_pls_golite062009
  • structural molecule activity
    		•  0.272316540117209 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.136726704233672 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.118016217031359 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0912115683429473 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle