| Protein: | rpn-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 504 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpn-3.
| Description | E-value | Query Range |
Subject Range |
|
|
413.0 | [0..1] | [503..122] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MAPKTGETVV EKMEVDEAKQ DVPATEPAKD LNAIAVENIK EQLAALDKGE EHLITRVLQV 60
61 LPKTRKQIND NVLYKLVSSH LSSDAQFAEG MLKYLH
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [97-309] |
1 11 21 31 41 51
| | | | | |
1 YTPAADTEVQ PMDTSNVKTK SPKKGVKPVF ASPESDCYLR LLVLLHLYAQ KKNTEALALG 60
61 ENQLTSIYNF DRRTLDGLAA KTLYFLCVIY EREGRLFDHQ GFLNSRLRTA TLRNFSESQA 120
121 VLICWLLRCY LINRQYQSAA HLVSKVAFPD NASNNDLARY MYYQGRIKAL QLDYNSAAGY 180
181 FLQAQRKAPQ EGAIGFKQAV QKWVVVIGLL QGE
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 2fo7A |
| Description: | Crystal structure of an 8 repeat consensus TPR superhelix (trigonal crystal form) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [310-504] |
1 11 21 31 41 51
| | | | | |
1 IPDRSVFRQP IYRKCLAHYL DLSRGVRDGD VARFNHNLEQ FKTQFEADDT LTLIVRLRQN 60
61 VIKTAIKQIS LAYSRIYIKD IAKKLYITNE TETEYIVAKA IADGAIDAVI TSDVRDGPRY 120
121 MQSSETADIY RTSEPQAHFD TRIRYCLELH NQAVKALRYP PKKKIAVETI EQAREREQQE 180
181 LEFAKELADE DDDDF
|
| Detection Method: | |
| Confidence: | 7.522879 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.50995556050336 | bayes_pls_golite062009 |
| nucleic acid binding | 3.38144578566524 | bayes_pls_golite062009 |
| binding | 3.33026160538031 | bayes_pls_golite062009 |
| DNA binding | 3.30822066787723 | bayes_pls_golite062009 |
| transcription factor activity | 2.60537570879007 | bayes_pls_golite062009 |
| hydrolase activity | 2.30467124306022 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.32971938164691 | bayes_pls_golite062009 |
| transcription activator activity | 1.08566311616647 | bayes_pls_golite062009 |
| transcription repressor activity | 0.95491822926452 | bayes_pls_golite062009 |
| protein binding | 0.653872239015235 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.42135864069093 | bayes_pls_golite062009 |
| structural molecule activity | 0.272316540117209 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.0912115683429473 | bayes_pls_golite062009 |
