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Protein Overview: usp107

General Information:
Name(s) found: usp107 / SPBC839.10 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • U1 snRNP-associated protein Usp107 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 695 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    spliceosomal complex [RCALink to PubMed article]
    U1 snRNP [IDALink to PubMed article]
    Biological Process: nuclear mRNA 5'-splice site recognition [IC]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRQNTQAAG MPMMPQVPMV GNGVPYVVPI QPVFAPLPPD YRSLYKKLYG QGAFLVDNPV  60
   61 EASSPYDFSQ PILKFGKLPI KQVLRDNESQ QKDRKNLPRN QKSNEIQEKQ TFQTPSSEKS 120
  121 TTERESRPFV PPNSQQMRRM LFIGNIPKEL DDFWMDKILR LSGKLASWRR VADADNSMTS 180
  181 FGFAEFESNE QFSRALEALN DFVVPPLYEG GPSTRLSLIT DVENEGLYRE WQTSRYARNK 240
  241 QKEINILQQI RFNLERICQD IGNFDVRSRI ERAARQAREK NEKLLQNVKT SEIPINAADL 300
  301 EGINPELLPV IEEEIRSFRD QSAMKKREKQ RSKDEYASLY KEYTRKEQEK LRKQNDDLQN 360
  361 LLSKHRISRI PMSTVNAFLR AEDSIPESFS DEQAYYEEKR RKDQLEAEEY YARERRWMNR 420
  421 EKARTAALER EAAREEEERV NNTSFGTYLS EKLASFDDDE EARVSRDEYF VDRAAWIRHR 480
  481 AVARAREEDA DALDRKEEER ELRTRGEGAT VETENYVENG KLVTSEMPQH ENGPFKIKIQ 540
  541 TKKPAVPSER REFGLPERLL LEEEDEEPQG YSPNPQKPKP AMEENDAEKT KRLRSLIEKI 600
  601 PVEAESLWAL PIDWSKVTED LLKEEMQAFV TKKIIEYIGI QEDSLITFTI DHIRQHKGAE 660
  661 QLVSELDLAL AEDAPEFVSK VYRYLHVLLI LRSEA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..285] FFAS03 4.16 No description for 2ghpA was found.
    2 View Details [286..335] PSI-BLAST 3.09691 No description for 2dfsA was found.
    3 View Details [336..695] PSI-BLAST 13.522879 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 6.40066880991253 bayes_pls_golite062009
  • RNA binding
    		•  6.32219487559982 bayes_pls_golite062009
  • mRNA binding
    		•  4.87640532914983 bayes_pls_golite062009
  • U1 snRNA binding
    		•  3.93490468939017 bayes_pls_golite062009
  • snRNA binding
    		•  3.77997752511163 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.55052626921306 bayes_pls_golite062009
  • binding
    		•  2.88749864706998 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  2.7133834347239 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.55628738360472 bayes_pls_golite062009
  • structural molecule activity
    		•  1.30816853575581 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.10029555513317 bayes_pls_golite062009
  • DNA binding
    		•  0.984725930713243 bayes_pls_golite062009
  • protein binding
    		•  0.361619805766015 bayes_pls_golite062009
  • transcription factor activity
    		•  0.255891228964936 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.229644510503376 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle