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Protein Overview: spf30

General Information:
Name(s) found: spf30 / SPCC1281.02c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • splicing factor Spf30 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 311 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    spliceosomal complex [RCALink to PubMed article]
    Biological Process: assembly of spliceosomal tri-snRNP [ISSLink to PubMed article]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKELEEYKS QLALVQISLQ KTPQNEELQL LENDLKELIS LTENLLQESV ENDKNTFQNS  60
   61 QNGVAGFNTS KPVHIDFTPG NLVMARWVSG DYLFYPSRIT AVSGFGANKK YTVQFLDYPD 120
  121 IETVSLKHIK AMPEEKRQEI EGNKEILKKS TTIRSTPVRE PTKAISVASM STSPSNYASR 180
  181 ASSPDMKSSA AVTANVSPIQ NVAQHVSTLP KISPIPPSNP PPVPSVSYSQ KQQKQLKPKA 240
  241 ALEASQNSWK QFAARGVKTG RVGKRKKIGE SSIFKSTEDF PGRTNPKNFG NVARSGHREK 300
  301 HIYNYREDED S

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..54] MSA 3.089995 View MSA. No confident structure predictions are available.
    2 View Details [55..160] PSI-BLAST 21.69897 No description for 2hqeA was found.
    3 View Details [161..311] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle