YRC Public Data Repository - Protein Structure Prediction

Protein:	spf30
Organism:	Schizosaccharomyces pombe
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spf30.

Description	E-value	Query Range	Subject Range
gi\|42408381, gi\|... - gi\|50940399\|ref\|XP_479727.1\| putative survival motor neuron domain containing 1; splicing factor 30,... gi\|125559900 - gi\|125559900\|gb\|EAZ05348.1\| hypothetical protein OsI_27552 [Oryza sativa Indica Group]	258.0	[0..1]	[303..9]
gi\|145328250, gi... - gi\|30678012\|ref\|NP_849927.1\| nucleic acid binding [Arabidopsis thaliana], gi\|30678010\|ref\|NP_178361....	253.0	[0..1]	[303..13]
gi\|32407110, gi\|... - gi\|32407110\|ref\|XP_324151.1\| predicted protein [Neurospora crassa], gi\|28921911\|gb\|EAA31184.1\| predi... gi\|85097308 - gi\|85097308\|ref\|XP_960420.1\| hypothetical protein [Neurospora crassa OR74A]	251.0	[0..1]	[310..5]
gi\|38099172, gi\|... - gi\|39954119\|ref\|XP_364049.1\| hypothetical protein MG08894.4 [Magnaporthe grisea 70-15], gb\|EAA46551....	230.0	[0..3]	[310..4]
gi\|49109000, gi\|... - gi\|67901050\|ref\|XP_680781.1\| hypothetical protein AN7512.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	229.0	[0..1]	[283..7]
gi\|169769318 - gi\|169769318\|ref\|XP_001819129.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766987 - gi\|83766987\|dbj\|BAE57127.1\| unnamed protein product [Aspergillus oryzae]	215.0	[0..1]	[309..7]
gi\|66848517, gi\|... - gi\|70992071\|ref\|XP_750884.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668485... gi\|159124452 - gi\|159124452\|gb\|EDP49570.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	205.0	[0..11]	[308..20]
gi\|42549328, gi\|... - gi\|46128011\|ref\|XP_388559.1\| hypothetical protein FG08383.1 [Gibberella zeae PH-1], gi\|42549328\|gb\|E...	201.0	[0..1]	[310..7]

Back

Predicted Domain #1

Region A:
Residues: [1-54]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKELEEYKS QLALVQISLQ KTPQNEELQL LENDLKELIS LTENLLQESV ENDK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [55-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTFQNSQNGV AGFNTSKPVH IDFTPGNLVM ARWVSGDYLF YPSRITAVSG FGANKKYTVQ  60
   61 FLDYPDIETV SLKHIKAMPE EKRQEIEGNK EILKKSTTIR STPVRE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2hqeA
Description:	No description for 2hqeA was found.

Predicted Domain #3

Region A:
Residues: [161-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTKAISVASM STSPSNYASR ASSPDMKSSA AVTANVSPIQ NVAQHVSTLP KISPIPPSNP  60
   61 PPVPSVSYSQ KQQKQLKPKA ALEASQNSWK QFAARGVKTG RVGKRKKIGE SSIFKSTEDF 120
  121 PGRTNPKNFG NVARSGHREK HIYNYREDED S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits