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Protein Overview: gi|42408381, gi|...

General Information:
Name(s) found: gi|50940399 [NCBI NR]
gi|42408381 [NCBI NR]
gi|125601947 [NCBI NR]
gi|115474435 [NCBI NR]
gi|113622783 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|50940399|ref|XP_479727.1| putative survival motor neuron domain containing 1; splicing factor 30, survival of motor neuron-related [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|42408381|dbj|BAD09532.1| putative survival motor neuron domain containing 1; splicing factor 30, survival of motor neuron-related [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125601947|gb|EAZ41272.1| hypothetical protein OsJ_25779 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115474435|ref|NP_001060814.1| Os08g0109900 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113622783|dbj|BAF22728.1| Os08g0109900 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 297 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDLSVEELA SNLSTYKEQL REVRKIIKEK NDDPGISEYL DMEKELQEVI TLTEELLATA  60
   61 NQSGNTQNDV GLSPPNYSSG LQSEALDDPS QSHEKFAVGT KVQAVWSEDG EWYNATIEEL 120
  121 TENGYYVSFE GWGNKEEVDP ANVRSLEEEA ADALRQAEKE AEATKMAIKR KIEQAATSDF 180
  181 QMRSLPTKLR IDPNDPEDVK ATKRKKIHAF KSKARFEQLE FAQNKRQNAW QQFQTTKGKA 240
  241 KKVGFFSGRK KESIFKSPDD HRGKVGVTGS GKGLTEFQRR EKHLHLKDGS SDALDEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..297] PSI-BLAST 26.522879 No description for 2hqeA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.08306835796752 bayes_pls_golite062009
  • binding
    		•  3.03932294945523 bayes_pls_golite062009
  • protein binding
    		•  2.81959915474598 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.39870293911569 bayes_pls_golite062009
  • DNA binding
    		•  2.20609628916256 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.54356011397295 bayes_pls_golite062009
  • transcription factor activity
    		•  1.48392797294737 bayes_pls_golite062009
  • transcription factor binding
    		•  1.47472377622426 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.30540808654443 bayes_pls_golite062009
  • chromatin binding
    		•  0.86899475761353 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.53946303154276 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.30405575160278 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  0.223495463070134 bayes_pls_golite062009
  • transcription activator activity
    		•  0.181941750923533 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.141502107934206 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  0.0975466265461999 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle