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Protein Overview: SPBC13A2.02

General Information:
Name(s) found: SPBC13A2.02 [Sanger Pombe]
Description(s) found:
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  • gi|9453828|emb|CAB99395.1| nucleoporin Nup82 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|74624915|sp|Q9P382.1|NUP82_SCHPO RecName: Full=Nucleoporin nup82; AltName: Full=Nuclear pore protein nup82 [NCBI NR]
  • gi|19113207|ref|NP_596415.1| nucleoporin Nup82 [Schizosaccharomyces pombe] [NCBI NR]
  • nucleoporin Nup82 [Sanger Pombe]
  • Nucleoporin nup82 OS=Schizosaccharomyces pombe GN=nup82 PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SEQUENCE ORPHAN: Q9P382; [pompepVF.fasta]
  • Hypothetical protein [pompep4896]
  • |||putative nuclear pore factor [pompepnew.fasta]
  • SPBC13A2.02 protein [4896.FASTAC]
  • |||nucleoporin|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|9453828|emb|CAB99395.1| SPBC13A2.02 [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • (Q9P382) Hypothetical protein [pompep4896_normal_reversed]
  • |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC13A2.02 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC13A2.02 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |nup82||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Nucleoporin nup82 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup82 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 803 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDALink to PubMed article]
    nuclear pore [ISSLink to PubMed article]
    Biological Process: nucleocytoplasmic transport [ISSLink to PubMed article]
    ribosomal subunit export from nucleus [ISS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTIMSQEV SWTDILEKHP ALRWIKPIPE DWEIFPKHLC AFESFLYVAV GQEVRSLDCR  60
   61 LLKHKNEASH KNFYKKLFNP ELDFMIEQIC LSKNGRFLAV VGKSKIVILG LRSKLSEQNP 120
  121 LAESVSNFGE SVNNFSNSEH QENGTNSLKL SEVTICSVAV INPSSQIVSV RFHPLGKSGR 180
  181 SLVVLTETSL LLYEAGNGVL MPDYEIPLKL THQASNSFDA DVDLHIPTAF CFSNVSQGWG 240
  241 VFTIYILTRG GDVFSVCPVM PANAMIPQDV LKQIRLILTK KEDDADAENH RRNVHWITKL 300
  301 LGEAALANDL STSFVISEGS SELFDSSDYV SVRRPDDFSF IPSMQGPFLL QPAVADDELI 360
  361 EDYCDIYSFG MNPIDVLAIG GSEGRLDLLL LVSEVSGRWS KLNDHGLASM KLIVSQVHSL 420
  421 YLSNNNPYMV LQPDIQSPYS LIAYHANGLH VVDIESWARD LNLNFENSEF LNNEEENDED 480
  481 ELSNVLVSIP SRTSVLERLD TNPLNESTDA VVGCAQLYYP SLGKILISLT RNWQTTVFDD 540
  541 SDLATMGVNK ESLSNEMDYS KSLGTSSLEQ VDDLDEKLTY TPLYVSLLEK TPFTDPSIPS 600
  601 LVERTIVPAE LQNEITVSSA SLRFLGKVVA RYRETLNLLD HGCSELHHRL KLQREEYERQ 660
  661 QNHIYKLSDR ISNFREKAWS TEHLEHLTSD MSMCEKRIDQ VLQRVMDLRV PDLSDKEKQF 720
  721 IKEIGNYKEK VTGERGIEKR VETLKTLLQR TKPRDAQTTL VASSSDMRLA AIEQLQKLLA 780
  781 QQSLSIKELK TKTVSFQRLL QTS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..393] FFAS03 3.0 Tup1, C-terminal domain
    2 View Details [394..472] PSI-BLAST 5.045757 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
    3 View Details [473..803] PSI-BLAST 23.09691 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.93365005054985 bayes_pls_golite062009
  • protein binding
    		•  1.54344559376183 bayes_pls_golite062009
  • transporter activity
    		•  1.23232041140488 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.750051725890322 bayes_pls_golite062009
  • RNA binding
    		•  0.430594402629414 bayes_pls_golite062009
  • protein transporter activity
    		•  0.287037949110584 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0245411309982146 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle