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Protein Overview: SPAC10F6.04

General Information:
Name(s) found: SPAC10F6.04 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • RCC domain protein Ats1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 351 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: tRNA modification [ISS]
    microtubule-based process [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLSLGSNGN FQLGLNNDED VYSPQIVPFD RAIEKISCGG NHTLLLDEDS QLWACGDNRK  60
   61 GQCGYEVKEP LYNPLSPDYL RIFTRVSHER WVFLTCGWEF SVIVHADRRR VCSCGEGLSG 120
  121 ELGQGNRSNS QGLREIDIPY LDDKEFIIDI SAGLRHWICV TNEGNLYGCG DGRKGQLGPV 180
  181 VMKTVNKVSF LGRIEHAQAV VCGVQFSAVL QETGHVIVLG GEKWNVAAEC DAWQANNSEL 240
  241 SSSICSISAN WSTLSLLSTE GCVYAFGRCD RAQKAHTKAS DIVQIASGTE HNILRTKKGS 300
  301 VLIYGWNEHG NASNDDKRDV YDAKTLQLPG WAYIVAAGYA TSWIVIEENH K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..351] PSI-BLAST 71.522879 Regulator of chromosome condensation RCC1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.79978015066238 bayes_pls_golite062009
  • Ran guanyl-nucleotide exchange factor activity
    		•  1.12611051197363 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  1.05993294531818 bayes_pls_golite062009
  • GTPase regulator activity
    		•  1.03758696380346 bayes_pls_golite062009
  • ligase activity
    		•  0.957134518791255 bayes_pls_golite062009
  • guanyl-nucleotide exchange factor activity
    		•  0.947267197207143 bayes_pls_golite062009
  • small GTPase regulator activity
    		•  0.882132361980766 bayes_pls_golite062009
  • protein binding
    		•  0.775788303004353 bayes_pls_golite062009
  • Ras guanyl-nucleotide exchange factor activity
    		•  0.642436223706285 bayes_pls_golite062009
  • catalytic activity
    		•  0.261970921089142 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle