YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: swd2

General Information:
Name(s) found: swd2 / SPBC18H10.06c [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • pir||T39770 trp-ast repeats containing protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582345|sp|O60137.1|SWD2_SCHPO RecName: Full=Set1 complex component swd2; Short=Set1C component swd2; AltName: Full=COMPASS component swd2; AltName: Full=Complex proteins associated with set1 protein swd2 [NCBI NR]
  • gi|3006183|emb|CAA18403.1| Set1C complex subunit Swd2.1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112522|ref|NP_595730.1| COMPASS complex subunit Swd2 [Schizosaccharomyces pombe] [NCBI NR]
  • COMPASS complex subunit Swd2 [Sanger Pombe]
  • Set1 complex component swd2 OS=Schizosaccharomyces pombe GN=swd2 PE=2 SV=1 [Swiss-Prot]
  • WD REPEAT PROTEIN: O60137; [pompepVF.fasta]
  • Trp-ast repeats containing protein [pompep4896]
  • |swd2||SET1 complex (TAP) (PMID 12488447) [pompepnew.fasta]
  • Swd2 protein (Spbc18h10.06c protein) [4896.FASTAC]
  • |swd2|swd2.1|SET1 complex (TAP) (PMID 12488447)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • trp-ast repeats containing protein [Schizosaccharomyces pombe]gi|3006183|emb|CAA18403.1| SPBC18H10.06c [Schizosaccharomyces pombe]gi|7493534|pir||T39770 trp-ast repeats containing protein - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |swd2|swd2.1|WD repeat protein|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O60137) Trp-ast repeats containing protein [pompep4896_normal_reversed]
  • |swd2|swd2.1|Set1C complex subunit Swd2.1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC18H10.06c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC18H10.06c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Set1 complex component swd2 (Set1C component swd2) (COMPASS component swd2) (Complex proteins associated with set1 protein swd2) [nr-271106-contam.fasta]
  • Set1 complex component swd2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swd2 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 357 amino acids

    Gene Ontology:
    Cellular Component: Set1C/COMPASS complex [IDALink to PubMed article]
    nuclear chromatin [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ICLink to PubMed article]
    histone methylation [IMPLink to PubMed article]
    histone H3-K4 methylation [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTVSITFDL LSSMQPRKWL KNQNFVGEIT SLSFDDSGEL CLASCTDDTL QLYNCISGKF  60
   61 VKSLASKKYG AHLGRFTHHS NSLIHASTKE DNTVRYLDVV TNRYLRYFPG HKQTVTSIDV 120
  121 SPADETFLSA SLDNTIRLWD LRSPNCQGLL NVSSPVVAAF DATGLIFASV SERKYKISLY 180
  181 NIKSFDARPF QDIPLTFLPP HVRIANVEFS TDGKYLLLTT GNDFHYVIDA YSGSELLRVP 240
  241 SKVSTKTQDG NLTYYASACM SPDSKFLFTS YDNEHLCMYQ LPELKQTVNS DHIVNSFTEM 300
  301 GLASTTPTSN SHSTENPLAI IPSSTSKNLL PETPSIVRFN PRFSQLVTAH SGVIFWT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..357] PSI-BLAST 64.09691 PAF-AH Holoenzyme: Lis1/Alfa2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • histone methyltransferase activity (H3-K4 specific)
    		•  4.71992275913384 bayes_pls_golite062009
    		• 3.48848918010996 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  3.25521258308263 bayes_pls_golite062009
  • tubulin binding
    		•  2.76945430061825 bayes_pls_golite062009
  • microtubule binding
    		•  2.72684103222924 bayes_pls_golite062009
  • dynein binding
    		•  2.54821997913979 bayes_pls_golite062009
  • binding
    		•  2.42570478946173 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.3610959773142 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.20122168933317 bayes_pls_golite062009
  • RNA binding
    		•  2.1927334052131 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.90457914882449 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  1.85632145559025 bayes_pls_golite062009
  • snoRNA binding
    		•  1.76991421703041 bayes_pls_golite062009
  • structural molecule activity
    		•  1.47448876401574 bayes_pls_golite062009
  • DNA binding
    		•  1.4719281452238 bayes_pls_golite062009
  • actin binding
    		•  1.40054662654509 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  1.35170368882651 bayes_pls_golite062009
  • protein binding
    		•  1.21879977456466 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.21305848427711 bayes_pls_golite062009
  • histone-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • protein-lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • lysine N-methyltransferase activity
    		•  1.15313682561559 bayes_pls_golite062009
  • transcription factor activity
    		•  0.883016478133271 bayes_pls_golite062009
  • histone binding
    		•  0.685319917508843 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.676924760416604 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.658573452658359 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.625780732991652 bayes_pls_golite062009
  • telomerase activity
    		•  0.51194134550542 bayes_pls_golite062009
  • transcription factor binding
    		•  0.489473003915035 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.426429095658617 bayes_pls_golite062009
  • kinase activity
    		•  0.387572734234845 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.30761651528651 bayes_pls_golite062009
  • protein kinase activity
    		•  0.229242350006544 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.226335610368636 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.220747580531792 bayes_pls_golite062009
  • ligase activity
    		•  0.20682813699621 bayes_pls_golite062009
  • RNA-directed DNA polymerase activity
    		•  0.18203222513175 bayes_pls_golite062009
  • myosin heavy chain kinase activity
    		•  0.144032354192911 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.0532675540353509 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.00335766408304172 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle