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Protein Overview: SPCC16C4.06c

General Information:
Name(s) found: SPCC16C4.06c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • tRNA pseudouridylate synthase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 413 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: pseudouridine synthesis [IEA]
    tRNA modification [ISSLink to PubMed article]
    Molecular Function: RNA binding [IEA]
    lyase activity [IEA]
    pseudouridine synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSLLRPSRF SANQSVLCLL QRHRVFFSSI SVKPRKRMVY CVVSYRGTGF AGLQYNANVK  60
   61 TIQDTLFQAF ARVGAVVQVN ADSPKKIRMC SAARTDKGVH AIVNVLGLKV LDNQPLPHVV 120
  121 NLVNDILPPC IRVWKMARTF NSFSPHTVCD SRVYEYWLPV SSLLTPRPCT LEAYVIAKAS 180
  181 EKAFPINETL SHLANLSKQD CVANSLSEPF RLSKPKLDFL KHACTMFRGT HRFHSYTTEK 240
  241 GFSDASSRRF LLDVRVDNLH IDKLNRQWVK LIFHGQSFMK HQIRKMVGIL IHLTRTGWNA 300
  301 QVLLNTFNNS YRIRIPRAPA EFLLLNQPIF QAFNKKCSRF DHEPVEWSCA QKGIDQFAHS 360
  361 FLRTPMFDCF ISSESFQSFF ILQKQFQLFQ DLALLTSFDF LEPSSRRDIL GEK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..342] PSI-BLAST 80.30103 No description for 2nqpA was found.
    2 View Details [343..413] MSA 1.095997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.19957135839682 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  3.78688422405974 bayes_pls_golite062009
  • isomerase activity
    		•  2.91720316078381 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.31595692797262 bayes_pls_golite062009
  • catalytic activity
    		•  2.02180970970004 bayes_pls_golite062009
  • binding
    		•  1.84674955201903 bayes_pls_golite062009
  • DNA binding
    		•  1.71136719569439 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.59449441921256 bayes_pls_golite062009
  • RNA binding
    		•  0.706879359688019 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle