YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPAC105.03c

General Information:
Name(s) found: SPAC105.03c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • transcription factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 708 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    fungal-type vacuole [IDALink to PubMed article]
    Biological Process: gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQSSSPSQP ESQAQPNLCI PCSLGTCLIH FHEFSSSSFM DPVSLFCSSP YPNLPPHSRS  60
   61 SSLESKKPSV ASQDVKSDGT LPIGTNNNPL IPSHSQESSH WTIRHESMPS ALAGSSAQSM 120
  121 QQFPSITQNE ENFRFKKSFT QPQPIVKETT FPKSEPGQEH AKLSDLSYEE FLKKYSSTKV 180
  181 ERVSEAAPPP SSLNSSTVLD ENDSLISQGS SVDDQTDFLG FDDSLSYAYI LNPTSDSDVD 240
  241 LIRQYFIPKE GTYTFSNMHI RYVSANPKTP VMYMVDPAYE PHKQIARYEK LQQIFQVVEA 300
  301 TVSPEVGERL IGLYFRYIHR VYPVIHGERF LLAFKKAKHK LSPILLTAMY ASSIIYWDAD 360
  361 KELRNYPRLD AKKLWDLTED FLDLSFSLSR LSTLQAAIIF LTGRPWINVA GNWSILTRAI 420
  421 ALAQILGFHL DCSEWQIPKE EKILRNRVWW ALFVNEKWLS MYIGINASIR QDDYLVPPLT 480
  481 DNQLLAGEQR IADSFNVFVK MAELSILLQN VLQHLFNARA VMTMSKNRRT VAQKISKYLI 540
  541 SLEEFSCSCN LRENQPGSLS LFLQIDALEL LLRKTALKLK LTDAVYQQEM LNVVQRCVSH 600
  601 FLAINESHFT DFFWPYSQFY FCILSSAIIK MYLDFEFNEN FNATTFGLLS SFTKHCVWLK 660
  661 FRNFDLVFMA YKRLNALLIE LSSGRPLIGK LLQETFEHRK RNLDETLT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] MSA 1.252997 View MSA. No confident structure predictions are available.
    2 View Details [86..262] FFAS03 2.13 PPR1
    3 View Details [263..389] deduced N/A No confident structure predictions are available.
    4 View Details [390..604] MSA 5.105996 View MSA. No confident structure predictions are available.
    5 View Details [605..708] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  4.34861813464065 bayes_pls_golite062009
  • DNA binding
    		•  4.03985756894684 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.97978190843512 bayes_pls_golite062009
  • transcription factor activity
    		•  2.87348461329489 bayes_pls_golite062009
  • binding
    		•  2.82809978070212 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.70904317608141 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  2.08956709478484 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.67344049333457 bayes_pls_golite062009
  • transcription activator activity
    		•  0.822069987038721 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle