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Protein Overview: rpc17

General Information:
Name(s) found: rpc17 / SPAPB1E7.10 [Sanger Pombe]
Description(s) found:
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  • gi|76782155|gb|ABA54848.1| RNA polymerase III subunit Rpc17 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|74623715|sp|Q9C0Z9.1|RPC9_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc9; Short=RNA polymerase III subunit C9; AltName: Full=RNA polymerase III subunit C17 [NCBI NR]
  • gi|19115048|ref|NP_594136.1| DNA-directed RNA polymerase III complex subunit Rpc17 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|13624765|emb|CAC36927.1| DNA-directed RNA polymerase III complex subunit Rpc17 [Schizosaccharomyces pombe] [NCBI NR]
  • DNA-directed RNA polymerase III complex subunit Rpc17 [Sanger Pombe]
  • DNA-directed RNA polymerase III subunit rpc9 OS=Schizosaccharomyces pombe GN=rpc17 PE=2 SV=1 [Swiss-Prot]
  • RNA POLYMERASE III SUBUNIT; SIMILAR TO S. CEREVISIAE RPC17: Q9C0Z9; [pompepVF.fasta]
  • PUTATIVE RNA POLYMERASE III SUBUNIT C17; BY SIMILARITY TO S. CEREVISIAE RPC17: Q9C0Z9; [pompepV13]
  • Putative RNA polymerase III subunit C17, by similarity to S. cerevisiae RPC17 [pompep4896]
  • |rpc17||RNA polymerase III subunit (putative) [pompepnew.fasta]
  • SPAPB1E7.10 protein (Rpc17 protein) [4896.FASTAC]
  • |rpc17||DNA-directed RNA polymerase III complex (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative RNA polymerase III subunit C17; by similarity to S. cerevisiae RPC17 [Schizosaccharomyces pombe]gi|13624765|emb|CAC36927.1| SPAPB1E7.10 [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • |rpc17||DNA-directed RNA polymerase III complex |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q9C0Z9) Putative RNA polymerase III subunit C17, by similarity to S. cerevisiae RPC17 [pompep4896_normal_reversed]
  • |rpc17||DNA-directed RNA polymerase III complex subunit Rpc17|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • RNA polymerase III subunit Rpc17 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • SPAPB1E7.10 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAPB1E7.10 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • DNA-directed RNA polymerase III subunit rpc9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc17 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 129 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    DNA-directed RNA polymerase III complex [IGILink to PubMed article]
    Biological Process: transcription initiation from RNA polymerase III promoter [IGILink to PubMed article]
    Molecular Function: DNA-directed RNA polymerase activity [IGILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLEARDAY LTNAEVFFHL KEMENEQNAR TQERGAAQAL VCENLRTIQF EILKYLSSQG  60
   61 NCEGLTKERF LDCIAIFNEF ELTKAEILVI LNNKPSSVPE LYACIEGIEE RFKEEDIFKL 120
  121 VEKINTTFP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..129] PSI-BLAST 30.09691 Subunits Rpb4 and Rpb7 of human RNA polymerase II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.43501887532465 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.43501887532465 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  5.88847066010291 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  3.86808684657182 bayes_pls_golite062009
  • transferase activity
    		•  3.42143089321218 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.4721848902664 bayes_pls_golite062009
  • binding
    		•  2.44438550013082 bayes_pls_golite062009
  • catalytic activity
    		•  1.17990683373825 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  0.8583308140751 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  0.8583308140751 bayes_pls_golite062009
  • protein binding
    		•  0.704503094115863 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.35631508447468 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle