YRC Public Data Repository - Protein Structure Prediction

Protein:	rpc17
Organism:	Schizosaccharomyces pombe
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpc17.

Description	E-value	Query Range	Subject Range
gi\|76653291 - gi\|76653291\|ref\|XP_584162.2\| PREDICTED: similar to Calcitonin gene-related peptide-receptor componen...	158.0	[0..1]	[129..66]
gi\|50751915 - gi\|50751915\|ref\|XP_422576.1\| PREDICTED: similar to RIKEN cDNA 2610028L19 [Gallus gallus]	154.0	[0..6]	[126..244]
CE01606 - WBGene00010911 Zinc-binding dehydrogenases status:Partially_confirmed TR:Q09593 protein_id:CAA87050....	143.0	[0..1]	[129..402]
gi\|42551040, gi\|... - gi\|46138649\|ref\|XP_391015.1\| hypothetical protein FG10839.1 [Gibberella zeae PH-1], gi\|42551040\|gb\|E...	135.0	[0..1]	[128..65]
gi\|73957611 - gi\|73957611\|ref\|XP_536833.2\| PREDICTED: similar to Calcitonin gene-related peptide-receptor componen...	134.0	[0..1]	[129..1]
gi\|125776201, gi... - gi\|54638941\|gb\|EAL28343.1\| GA16175-PA [Drosophila pseudoobscura], gi\|125776201\|ref\|XP_001359199.1\| G...	132.0	[0..6]	[126..506]
gi\|55628662 - gi\|55628662\|ref\|XP_519126.1\| PREDICTED: calcitonin gene-related peptide-receptor component protein i... CRCP - CGRP receptor component	130.0	[0..1]	[129..1]
RPC9_MOUSE - DNA-directed RNA polymerase III subunit RPC9 OS=Mus musculus GN=Crcp PE=2 SV=1	129.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLEARDAY LTNAEVFFHL KEMENEQNAR TQERGAAQAL VCENLRTIQF EILKYLSSQG  60
   61 NCEGLTKERF LDCIAIFNEF ELTKAEILVI LNNKPSSVPE LYACIEGIEE RFKEEDIFKL 120
  121 VEKINTTFP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.09691
Match:	2c35A
Description:	Subunits Rpb4 and Rpb7 of human RNA polymerase II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA-directed RNA polymerase activity	8.43501887532465	bayes_pls_golite062009
RNA polymerase activity	8.43501887532465	bayes_pls_golite062009
nucleotidyltransferase activity	5.88847066010291	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	3.86808684657182	bayes_pls_golite062009
transferase activity	3.42143089321218	bayes_pls_golite062009
transcription regulator activity	2.4721848902664	bayes_pls_golite062009
binding	2.44438550013082	bayes_pls_golite062009
catalytic activity	1.17990683373825	bayes_pls_golite062009
histone acetyltransferase activity	0.8583308140751	bayes_pls_golite062009
lysine N-acetyltransferase activity	0.8583308140751	bayes_pls_golite062009
protein binding	0.704503094115863	bayes_pls_golite062009
ribonuclease activity	0.35631508447468	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: