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Protein Overview: SPBC1773.16c

General Information:
Name(s) found: SPBC1773.16c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • transcription factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 595 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    integral to membrane [IEA]
    nuclear chromosome [ICLink to PubMed article]
    Biological Process: gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]
    zinc ion binding [ISSLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRIRNACEL CRRKKLRCNG ELTCQNCMVY GEECRYVKRV KHDNRAAVQE NERYPILYTP  60
   61 LSTSDHDNDE ENEINELKNA VKALDKRFDN FELKLEALFS LLRSQQDSER KVKPGGFPSL 120
  121 VSQILSAGAL VDSKLQAYTM RTNFFSNGFS SNDLFPHSFP TWKSAFRDVP DKDWAKTCLD 180
  181 WYFRFINCNW PIFYKKQYME SFEKLYIDKN LVKGAWIVSF YAILALAVSR DKRVDNSKLA 240
  241 ESFFATSWFL IQRPGFFLTP QLEKIQALVI MIQFASHLSL YNLCKKLCGQ VCLMVKDLNL 300
  301 HKESTDKDLD QDMAELHRRI FWVCYIFETT TSLIFGTPPV LGDLEIECKY PDINYAHCFA 360
  361 ENVQGDLIFT CEISLTVLKH EIRTKLYNSN NVFLDKGQKG VISNIQTKIL NFERAIPSEM 420
  421 KHYFEILKAG NGLPEELDII KQHFFTACVE IYLSYCNTLI YLYLADDSIE GSKICLSTAR 480
  481 AAIDVIKGFL VVLDPISKNI CYLWLFLYCP FTPFLTVFSH LLEDDDLDAD ICVKDVDRLY 540
  541 SIHAFFLKMK DISGEFAERL SVITENFIQS AEQYLALQNT SVFGTFDALS ESFSI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] PSI-BLAST 3.154902 Gal4; CD2-Gal4
    2 View Details [66..183] deduced N/A No confident structure predictions are available.
    3 View Details [184..363] Pfam 30.853872 No description for PF04082.9 was found. Confident ab initio structure predictions are available.
    4 View Details [364..595] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  4.56444258780502 bayes_pls_golite062009
  • DNA binding
    		•  4.26146437716972 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.17369933547911 bayes_pls_golite062009
  • transcription factor activity
    		•  3.049435548132 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.93914501897006 bayes_pls_golite062009
  • binding
    		•  2.91929847152301 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  2.44382866473054 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.87955444697212 bayes_pls_golite062009
  • transcription activator activity
    		•  0.915626626047549 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle