| Protein: | SPBC1773.16c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 595 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1773.16c.
| Description | E-value | Query Range |
Subject Range |
|
|
277.0 | [0..1] | [590..4] |
|
|
256.0 | [0..1] | [569..4] |
|
|
248.0 | [0..2] | [580..65] |
|
|
243.0 | [0..2] | [576..65] |
|
|
241.0 | [0..2] | [578..64] |
|
|
234.0 | [0..2] | [572..63] |
|
|
231.0 | [0..2] | [574..29] |
|
|
225.0 | [0..2] | [593..58] |
|
Region A: Residues: [1-65] |
1 11 21 31 41 51
| | | | | |
1 MKRIRNACEL CRRKKLRCNG ELTCQNCMVY GEECRYVKRV KHDNRAAVQE NERYPILYTP 60
61 LSTSD
|
| Detection Method: |  |
| Confidence: | 3.154902 |
| Match: | 1d66A |
| Description: | Gal4; CD2-Gal4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
| transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
|
Region A: Residues: [66-183] |
1 11 21 31 41 51
| | | | | |
1 HDNDEENEIN ELKNAVKALD KRFDNFELKL EALFSLLRSQ QDSERKVKPG GFPSLVSQIL 60
61 SAGALVDSKL QAYTMRTNFF SNGFSSNDLF PHSFPTWKSA FRDVPDKDWA KTCLDWYF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [184-363] |
1 11 21 31 41 51
| | | | | |
1 RFINCNWPIF YKKQYMESFE KLYIDKNLVK GAWIVSFYAI LALAVSRDKR VDNSKLAESF 60
61 FATSWFLIQR PGFFLTPQLE KIQALVIMIQ FASHLSLYNL CKKLCGQVCL MVKDLNLHKE 120
121 STDKDLDQDM AELHRRIFWV CYIFETTTSL IFGTPPVLGD LEIECKYPDI NYAHCFAENV 180
181
|
| Detection Method: | |
| Confidence: | 30.853872 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.890 | 0.096 | nuclear chromosome | a.26.1 | 4-helical cytokines |
|
Region A: Residues: [364-595] |
1 11 21 31 41 51
| | | | | |
1 QGDLIFTCEI SLTVLKHEIR TKLYNSNNVF LDKGQKGVIS NIQTKILNFE RAIPSEMKHY 60
61 FEILKAGNGL PEELDIIKQH FFTACVEIYL SYCNTLIYLY LADDSIEGSK ICLSTARAAI 120
121 DVIKGFLVVL DPISKNICYL WLFLYCPFTP FLTVFSHLLE DDDLDADICV KDVDRLYSIH 180
181 AFFLKMKDIS GEFAERLSVI TENFIQSAEQ YLALQNTSVF GTFDALSESF SI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
