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Protein Overview: SPBC725.08

General Information:
Name(s) found: SPBC725.08 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • transcription factor [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 609 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Biological Process: chromatin silencing by small RNA [ISS]
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVHQESEV EYSRWKRERS PERSQRRSQS PPGEQSAYHR ERSPLRKRGN YYDDRTRASG  60
   61 PYPTFTKPLI DPYTQTNAVS YERFIRWYSK ENHISATTED LYNSLHGTYN NYKQDLYART 120
  121 ARSFVESHCD EAWFEDSYWV DESQGRVLEV SENEKSYRRA LYDKFMDRLD AGYYDDFQLP 180
  181 TAEDVIEKPS IPDNDTDDSI LPSNDPQLSK WNQDSRNDAM ENTLLVSHVL PNISVAQIHN 240
  241 ALDGISFVQH FSLSTINLIK NDERSLWVHF KAGTNMDGAK EAVDGIQLDS NFTIESENPK 300
  301 IPTHTHPIPI FEIASSEQTC KNLLEKLIRF IDRASTKYSL PNDAAQRIED RLKTHASMKD 360
  361 DDDKPTNFHD IRLSDLYAEY LRQVATFDFW TSKEYESLIA LLQDSPAGYS RKKFNPSKEV 420
  421 GQEENIWLSD LENNFACLLE PENVDIKAKG ALPVEDFINN ELDSVIMKED EQKYRCHVGT 480
  481 CAKLFLGPEF VRKHINKKHK DWLDHIKKVA ICLYGYVLDP CRAMDPKVVS TSYVSLQILN 540
  541 KPYVGFRNIN ANYTFPTTSY SRRNDEEITS GASSQKSYSR QEPMIHRREF YRTYQDLDAP 600
  601 NQEVPELDY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] MSA 3.033996 View MSA. No confident structure predictions are available.
    2 View Details [139..334] FFAS03 3.06 CG8781 protein
    3 View Details [335..405] deduced N/A No confident structure predictions are available.
    4 View Details [406..609] MSA 3.037992 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  4.65259034341669 bayes_pls_golite062009
  • binding
    		•  3.48033873254013 bayes_pls_golite062009
  • RNA binding
    		•  2.51560202858525 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.2045206027152 bayes_pls_golite062009
  • DNA binding
    		•  1.99030664201171 bayes_pls_golite062009
  • mRNA binding
    		•  1.52376515340629 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.26023364760328 bayes_pls_golite062009
  • transcription factor activity
    		•  1.09958329302628 bayes_pls_golite062009
  • protein binding
    		•  1.05805521997665 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.327072171076297 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle