| Protein: | SPBC725.08 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 609 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC725.08.
| Description | E-value | Query Range |
Subject Range |
|
|
503.0 | [0..39] | [600..143] |
|
|
491.0 | [0..11] | [602..13] |
|
|
485.0 | [0..19] | [587..53] |
|
|
481.0 | [0..21] | [602..29] |
|
|
473.0 | [0..17] | [577..82] |
|
|
472.0 | [0..18] | [577..58] |
|
|
451.0 | [0..99] | [575..3] |
|
|
444.0 | [0..220] | [602..15] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MSEVHQESEV EYSRWKRERS PERSQRRSQS PPGEQSAYHR ERSPLRKRGN YYDDRTRASG 60
61 PYPTFTKPLI DPYTQTNAVS YERFIRWYSK ENHISATTED LYNSLHGTYN NYKQDLYART 120
121 ARSFVESHCD EAWFEDSY
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [139-334] |
1 11 21 31 41 51
| | | | | |
1 WVDESQGRVL EVSENEKSYR RALYDKFMDR LDAGYYDDFQ LPTAEDVIEK PSIPDNDTDD 60
61 SILPSNDPQL SKWNQDSRND AMENTLLVSH VLPNISVAQI HNALDGISFV QHFSLSTINL 120
121 IKNDERSLWV HFKAGTNMDG AKEAVDGIQL DSNFTIESEN PKIPTHTHPI PIFEIASSEQ 180
181 TCKNLLEKLI RFIDRA
|
| Detection Method: | |
| Confidence: | 3.06 |
| Match: | 1hl6A |
| Description: | CG8781 protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.65259034341669 | bayes_pls_golite062009 |
| binding | 3.48033873254013 | bayes_pls_golite062009 |
| RNA binding | 2.51560202858525 | bayes_pls_golite062009 |
| transcription regulator activity | 2.2045206027152 | bayes_pls_golite062009 |
| DNA binding | 1.99030664201171 | bayes_pls_golite062009 |
| mRNA binding | 1.52376515340629 | bayes_pls_golite062009 |
| transcription repressor activity | 1.26023364760328 | bayes_pls_golite062009 |
| transcription factor activity | 1.09958329302628 | bayes_pls_golite062009 |
| protein binding | 1.05805521997665 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.327072171076297 | bayes_pls_golite062009 |
|
Region A: Residues: [335-405] |
1 11 21 31 41 51
| | | | | |
1 STKYSLPNDA AQRIEDRLKT HASMKDDDDK PTNFHDIRLS DLYAEYLRQV ATFDFWTSKE 60
61 YESLIALLQD S
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [406-609] |
1 11 21 31 41 51
| | | | | |
1 PAGYSRKKFN PSKEVGQEEN IWLSDLENNF ACLLEPENVD IKAKGALPVE DFINNELDSV 60
61 IMKEDEQKYR CHVGTCAKLF LGPEFVRKHI NKKHKDWLDH IKKVAICLYG YVLDPCRAMD 120
121 PKVVSTSYVS LQILNKPYVG FRNINANYTF PTTSYSRRND EEITSGASSQ KSYSRQEPMI 180
181 HRREFYRTYQ DLDAPNQEVP ELDY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
