YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: CE20643

General Information:
Name(s) found: CE20643 [WormBase]
Description(s) found:
Found 20 descriptions.
SHOW ALL
  • WBGene00017085 Serrate RNA effector molecule homolog status:Confirmed UniProt:Q966L5 protein_id:CCD68572.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 712 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: oviposition [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDSDDDGDR RRDKFARERR DEDYRRGGGG FNRYDNKRPG GRRDDYQVKR SRGDDADDSF  60
   61 DPVSRSGNGS DLPTESDSIY SGPLQTFKKF LTSQEDDISE EDAIKKYNEY KTEHRKHQLE 120
  121 RFFRAHKDEE WFRLKYKPDD AKKLREAHLE NVQKRLQVFN ELKEQGQFNK FSLDFGDAEA 180
  181 IIRMLDSVVV KLENGTEDEL KAVLAQKLED ESLADIKKDE NGNGTEQPKE EPEVKQESGA 240
  241 TEELEEGAIE DGTEKSSNKV NIHRTCSVFL RNIPPGLTYE ELEGLCKKSP GFLRLALTDG 300
  301 IAERKFYRRG WATFKRDINI KEICWALNAH RLRETDLNAI INRDITRRVR TNNGIASHKQ 360
  361 VAINDLKLAV KLTVLYDKKI GLFNAADEAD ADREMDIRMG VDLVAASTNP LIKEVKSLVP 420
  421 HDVLNDISEE EAELLGVSNG GEAPAEKIRF ERDDNILKAL DLLIVYLRIV HSIDFYNHGH 480
  481 YAQEDSMPNR CGLIHVRGQP PSGVSITTDE DGALVVPQKF VNDFISGFNS RIEKGLIEKQ 540
  541 YVSEEELEKM GKKDGEKEVE AFIQKNTVEL AKDKWLCPLS GKKFKGPEFI RKHLQSKHED 600
  601 KLEEARAEAD FFNNYLADAQ RPVDCEPKQA PRDDHRGGGG GERGGYGRER DDDRGPGGGG 660
  661 RNSFGGGGYD RRPQFPPRHS LGGRGGGGRY FEDAPRRQPV SYRDLDAPDD IP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] MSA 3.105979 View MSA. No confident structure predictions are available.
    2 View Details [136..255] PSI-BLAST 15.0 CG8781 protein
    3 View Details [256..500] PSI-BLAST 35.045757 Poly(A)-binding protein
    4 View Details [501..574] deduced N/A No confident structure predictions are available.
    5 View Details [575..712] PSI-BLAST 9.39794 No description for 1y0fB was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.81974022399062 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.846340475080433 bayes_pls_golite062009
  • RNA binding
    		•  0.592667110299614 bayes_pls_golite062009
  • protein binding
    		•  0.384349547706258 bayes_pls_golite062009
  • mRNA binding
    		•  0.0622475875612905 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle