| Protein: | CE20643 |
| Organism: | Caenorhabditis elegans |
| Length: | 712 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE20643.
| Description | E-value | Query Range |
Subject Range |
|
|
437.0 | [0..6] | [711..71] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MVDSDDDGDR RRDKFARERR DEDYRRGGGG FNRYDNKRPG GRRDDYQVKR SRGDDADDSF 60
61 DPVSRSGNGS DLPTESDSIY SGPLQTFKKF LTSQEDDISE EDAIKKYNEY KTEHRKHQLE 120
121 RFFRAHKDEE WFRLK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [136-255] |
1 11 21 31 41 51
| | | | | |
1 YKPDDAKKLR EAHLENVQKR LQVFNELKEQ GQFNKFSLDF GDAEAIIRML DSVVVKLENG 60
61 TEDELKAVLA QKLEDESLAD IKKDENGNGT EQPKEEPEVK QESGATEELE EGAIEDGTEK 120
121
|
| Detection Method: | |
| Confidence: | 15.0 |
| Match: | 1hl6A |
| Description: | CG8781 protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [256-500] |
1 11 21 31 41 51
| | | | | |
1 SSNKVNIHRT CSVFLRNIPP GLTYEELEGL CKKSPGFLRL ALTDGIAERK FYRRGWATFK 60
61 RDINIKEICW ALNAHRLRET DLNAIINRDI TRRVRTNNGI ASHKQVAIND LKLAVKLTVL 120
121 YDKKIGLFNA ADEADADREM DIRMGVDLVA ASTNPLIKEV KSLVPHDVLN DISEEEAELL 180
181 GVSNGGEAPA EKIRFERDDN ILKALDLLIV YLRIVHSIDF YNHGHYAQED SMPNRCGLIH 240
241 VRGQP
|
| Detection Method: | |
| Confidence: | 35.045757 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.81974022399062 | bayes_pls_golite062009 |
| nucleic acid binding | 0.846340475080433 | bayes_pls_golite062009 |
| RNA binding | 0.592667110299614 | bayes_pls_golite062009 |
| protein binding | 0.384349547706258 | bayes_pls_golite062009 |
| mRNA binding | 0.0622475875612905 | bayes_pls_golite062009 |
|
Region A: Residues: [501-574] |
1 11 21 31 41 51
| | | | | |
1 PSGVSITTDE DGALVVPQKF VNDFISGFNS RIEKGLIEKQ YVSEEELEKM GKKDGEKEVE 60
61 AFIQKNTVEL AKDK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [575-712] |
1 11 21 31 41 51
| | | | | |
1 WLCPLSGKKF KGPEFIRKHL QSKHEDKLEE ARAEADFFNN YLADAQRPVD CEPKQAPRDD 60
61 HRGGGGGERG GYGRERDDDR GPGGGGRNSF GGGGYDRRPQ FPPRHSLGGR GGGGRYFEDA 120
121 PRRQPVSYRD LDAPDDIP
|
| Detection Method: | |
| Confidence: | 9.39794 |
| Match: | 1y0fB |
| Description: | No description for 1y0fB was found. |
