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Protein Overview: SPBC83.05

General Information:
Name(s) found: SPBC83.05 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • mitochondrial RNA-binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 773 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    integral to membrane [IEA]
    mitochondrial inner membrane [ISSLink to PubMed article]
    Biological Process: mitochondrial genome maintenance [ISSLink to PubMed article]
    Molecular Function: RNA binding [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFLSRFTG LRNTSFLGHA RPFMFPRRYA HSLVAHNIGH IKLDPNEGLF FVDNLVNTPT  60
   61 YFYIQRYTAL LFQNNLKKQL SAAFPSSDTM QLEDIIFRWQ DGGAFLKVRY KEFPQDTEAV 120
  121 SEHVRESFRK RPVRTILHPF STPIPHMVHG IPWLQDLYIF PSRTVDVNFE GPPLSQERLY 180
  181 SIFRTYGKLR SVTINSPTSA TLSFSSLRSA TSALNCMHGF VYGKTEFHMR YRHMNRFVAF 240
  241 KDWLFSHPRF TIPLVAAAIT VLTASLFDPI RKFFVETNIV HGQKLRNINV VGWVKKKTRD 300
  301 IVLSPFHENG TNIKAPIWTT REKDCEQLKE WLDEALHSFI VVQGPRGSGK RDLVDRVVKE 360
  361 RKNVLFFDCD RLFSTTNTEM FVSTLASQTG YFPLFSFLNN ISSLIDMAAQ GLIGQKTGIV 420
  421 SSSEGQVRQI LNTTQTVLRS LALREHKEAD TSVLDESEFL EVHADRLPVV ILDNFQLRKL 480
  481 SNPMQRVVAE WAGNLVKEGI AHVLMLTPDV GGTKSLEQYV NGWENRTLLL GDADPVLAQR 540
  541 YVIESLPEEM QTEELRKELR VQLPKIGGRL RDLDYVARRL RVNSSSVSEA IGGIVSQNAS 600
  601 DILQTFLRPA SLTSEEKPTF TPEESWTLIT YLSQHEYIPY HMLMLDPLFK GHDDAVRALE 660
  661 ESELITITTV NARPDKVYAG KPVYVTAFRQ LVNDPVLSAN MQLVRCNALI GMANNAIKND 720
  721 EQELQMLKDL GNLESGVKDR AHYLTTRIQK NQGVITDNEK SIERLTEALK KID

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..336] PSI-BLAST 19.39794 No description for 2ghpA was found.
    2 View Details [337..679] FFAS03 1.01 Crystal structure of (13814777) from SULFOLOBUS SOLFATARICUS at 2.00 A resolution
    3 View Details [680..773] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  3.06679562635705 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.76055303585115 bayes_pls_golite062009
  • protein binding
    		•  1.32954276279597 bayes_pls_golite062009
  • RNA binding
    		•  1.18157050902203 bayes_pls_golite062009
  • mRNA binding
    		•  0.487879052146416 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  2.00435458244286 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.60867879098268 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.54036876924203 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.5218662658682 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.51917437681292 bayes_pls_golite062009
  • hydrolase activity
    		•  0.637958076892156 bayes_pls_golite062009
  • protein binding
    		•  0.409258528033042 bayes_pls_golite062009
  • catalytic activity
    		•  0.400036839701206 bayes_pls_golite062009
  • motor activity
    		•  0.294261683163235 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.15435325982346 bayes_pls_golite062009
  • nucleotide binding
    		•  0.153440379095025 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.130523976113733 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.130518519278213 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.46

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle