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Protein Overview: SPAC926.05c

General Information:
Name(s) found: SPAC926.05c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • diphthamide biosynthesis protein Dph4 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 139 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: peptidyl-diphthamide biosynthetic process from peptidyl-histidine [ISSLink to PubMed article]
    protein folding [IEA]
    Molecular Function: zinc ion binding [IEA]
    unfolded protein binding [IEA]
    Hsp70 protein binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHYSVLNLK DGKTYTDDEI KEAYRKALLL FHPDKCKEKP SVVYTIDQVK EAYQVLSSEK  60
   61 DRQQYQIKQE EESSHYYSIV DLSEFEELDN GSYYYPCRCG DLGGYVVTED DLENNRSVVP 120
  121 CMGCSLTIQV DYEIAESDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] PSI-BLAST 21.0 NMR STRUCTURE OF THE J-DOMAIN (RESIDUES 2-76) IN THE ESCHERICHIA COLI N-TERMINAL FRAGMENT (RESIDUES 2-108) OF THE MOLECULAR CHAPERONE DNAJ, 20 STRUCTURES
    2 View Details [79..139] FFAS03 2.98 Solution structure of the mouse DESR1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.03854863870179 bayes_pls_golite062009
  • protein binding
    		•  1.59319415069732 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.423488346839872 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.290883150382299 bayes_pls_golite062009
  • unfolded protein binding
    		•  0.26936882742456 bayes_pls_golite062009
  • kinase activity
    		•  0.256507044529735 bayes_pls_golite062009
  • transferase activity
    		•  0.240656521918556 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.217789331467722 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.169851030812486 bayes_pls_golite062009
  • heat shock protein binding
    		•  0.162050450070629 bayes_pls_golite062009
  • catalytic activity
    		•  0.106988907594358 bayes_pls_golite062009
  • DNA binding
    		•  0.10307408349439 bayes_pls_golite062009
  • protein kinase activity
    		•  0.0820836328401214 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  1.49983036545301 bayes_pls_golite062009
  • protein binding
    		•  0.535832402793455 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle